Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Rfx3P48381 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 AL590614.2-201ENSMUST00000225374 1937 ntBASIC14.8□□□□□ -0.04
Rfx3P48381 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 AC133083.1-201ENSMUST00000221736 2209 ntBASIC14.8□□□□□ -0.04
Rfx3P48381 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC14.8□□□□□ -0.04
Rfx3P48381 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Rfx3P48381 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Rfx3P48381 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC14.8□□□□□ -0.04
Rfx3P48381 AC135963.1-201ENSMUST00000211640 717 ntBASIC14.8□□□□□ -0.04
Rfx3P48381 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Rfx3P48381 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC14.8□□□□□ -0.04
Rfx3P48381 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Rfx3P48381 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC14.8□□□□□ -0.04
Rfx3P48381 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Rfx3P48381 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
Rfx3P48381 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC14.8□□□□□ -0.04
Rfx3P48381 Gm19430-201ENSMUST00000193847 2137 ntBASIC14.8□□□□□ -0.04
Rfx3P48381 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Rfx3P48381 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Rfx3P48381 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC14.8□□□□□ -0.04
Rfx3P48381 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Rfx3P48381 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC14.79□□□□□ -0.04
Rfx3P48381 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Rfx3P48381 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Rfx3P48381 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Rfx3P48381 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Rfx3P48381 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
Rfx3P48381 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC14.78□□□□□ -0.04
Rfx3P48381 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC14.78□□□□□ -0.04
Rfx3P48381 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Rfx3P48381 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
Rfx3P48381 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Rfx3P48381 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Rfx3P48381 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Rfx3P48381 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
Rfx3P48381 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC14.77□□□□□ -0.04
Rfx3P48381 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Rfx3P48381 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Rfx3P48381 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Rfx3P48381 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
Rfx3P48381 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC14.77□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms