Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col18a1P39061 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Col18a1P39061 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Col18a1P39061 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Col18a1P39061 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC21.78■■□□□ 1.08
Col18a1P39061 Mir7036b-201ENSMUST00000184791 63 ntBASIC21.78■■□□□ 1.08
Col18a1P39061 AC125206.2-201ENSMUST00000217454 574 ntBASIC21.78■■□□□ 1.08
Col18a1P39061 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Col18a1P39061 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Col18a1P39061 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col18a1P39061 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Col18a1P39061 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col18a1P39061 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col18a1P39061 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Col18a1P39061 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col18a1P39061 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC21.77■■□□□ 1.08
Col18a1P39061 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col18a1P39061 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Col18a1P39061 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Col18a1P39061 Gm5866-201ENSMUST00000177881 973 ntBASIC21.77■■□□□ 1.08
Col18a1P39061 Mir6977-201ENSMUST00000184960 64 ntBASIC21.77■■□□□ 1.08
Col18a1P39061 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC21.77■■□□□ 1.08
Col18a1P39061 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col18a1P39061 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col18a1P39061 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Col18a1P39061 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col18a1P39061 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col18a1P39061 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col18a1P39061 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Col18a1P39061 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC21.76■■□□□ 1.07
Col18a1P39061 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
Col18a1P39061 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
Col18a1P39061 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Col18a1P39061 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Gm7336-201ENSMUST00000107041 1232 ntBASIC21.76■■□□□ 1.07
Col18a1P39061 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC21.76■■□□□ 1.07
Col18a1P39061 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Gm27437-201ENSMUST00000183429 107 ntBASIC21.76■■□□□ 1.07
Col18a1P39061 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC21.76■■□□□ 1.07
Col18a1P39061 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col18a1P39061 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC21.75■■□□□ 1.07
Col18a1P39061 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC21.75■■□□□ 1.07
Col18a1P39061 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
Col18a1P39061 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC21.75■■□□□ 1.07
Col18a1P39061 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC21.75■■□□□ 1.07
Col18a1P39061 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Col18a1P39061 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col18a1P39061 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col18a1P39061 Gm16499-203ENSMUST00000204633 2177 ntBASIC21.75■■□□□ 1.07
Col18a1P39061 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col18a1P39061 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Col18a1P39061 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col18a1P39061 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Col18a1P39061 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col18a1P39061 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Col18a1P39061 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col18a1P39061 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col18a1P39061 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Col18a1P39061 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Col18a1P39061 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col18a1P39061 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col18a1P39061 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
Col18a1P39061 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Col18a1P39061 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col18a1P39061 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col18a1P39061 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Col18a1P39061 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC21.74■■□□□ 1.07
Col18a1P39061 Nudt18-203ENSMUST00000228768 1578 ntBASIC21.74■■□□□ 1.07
Col18a1P39061 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col18a1P39061 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col18a1P39061 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col18a1P39061 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col18a1P39061 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col18a1P39061 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col18a1P39061 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC21.73■■□□□ 1.07
Col18a1P39061 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Col18a1P39061 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Col18a1P39061 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col18a1P39061 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC21.73■■□□□ 1.07
Col18a1P39061 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC21.73■■□□□ 1.07
Col18a1P39061 Gpr146-202ENSMUST00000053120 1040 ntBASIC21.73■■□□□ 1.07
Col18a1P39061 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
Col18a1P39061 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col18a1P39061 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC21.73■■□□□ 1.07
Col18a1P39061 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col18a1P39061 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col18a1P39061 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms