Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Sdc1P18828 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
Sdc1P18828 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC13.51□□□□□ -0.25
Sdc1P18828 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Sdc1P18828 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC13.5□□□□□ -0.25
Sdc1P18828 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC13.5□□□□□ -0.25
Sdc1P18828 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sdc1P18828 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sdc1P18828 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Sdc1P18828 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sdc1P18828 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sdc1P18828 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sdc1P18828 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
Sdc1P18828 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sdc1P18828 Gm43352-201ENSMUST00000196419 3065 ntBASIC13.5□□□□□ -0.25
Sdc1P18828 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sdc1P18828 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sdc1P18828 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Sdc1P18828 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sdc1P18828 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sdc1P18828 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sdc1P18828 Nprl3-201ENSMUST00000020530 2865 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Sdc1P18828 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
Sdc1P18828 Gm37736-201ENSMUST00000193564 2802 ntBASIC13.49□□□□□ -0.25
Sdc1P18828 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Sdc1P18828 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 App-207ENSMUST00000227737 2827 ntBASIC13.49□□□□□ -0.25
Sdc1P18828 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC13.49□□□□□ -0.25
Sdc1P18828 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Gm42901-201ENSMUST00000197735 3171 ntBASIC13.49□□□□□ -0.25
Sdc1P18828 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Sdc1P18828 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Slc22a7-201ENSMUST00000087012 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Sdc1P18828 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC13.48□□□□□ -0.25
Sdc1P18828 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC13.48□□□□□ -0.25
Sdc1P18828 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC13.48□□□□□ -0.25
Sdc1P18828 Ccdc115-201ENSMUST00000042493 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC13.48□□□□□ -0.25
Sdc1P18828 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC13.48□□□□□ -0.25
Sdc1P18828 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 AC140930.3-201ENSMUST00000222935 274 ntBASIC13.48□□□□□ -0.25
Sdc1P18828 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Zfp783-201ENSMUST00000095946 670 ntBASIC13.48□□□□□ -0.25
Sdc1P18828 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC13.48□□□□□ -0.25
Sdc1P18828 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Sdc1P18828 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Sdc1P18828 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Tmem266-201ENSMUST00000034862 2408 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Sdc1P18828 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC13.47□□□□□ -0.25
Sdc1P18828 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Sdc1P18828 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Sdc1P18828 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms