Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
Smarce1O54941 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Smarce1O54941 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC19.47■□□□□ 0.71
Smarce1O54941 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC19.47■□□□□ 0.71
Smarce1O54941 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC19.47■□□□□ 0.71
Smarce1O54941 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC19.47■□□□□ 0.71
Smarce1O54941 Gm43353-201ENSMUST00000199224 1295 ntBASIC19.47■□□□□ 0.71
Smarce1O54941 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC19.47■□□□□ 0.71
Smarce1O54941 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC19.47■□□□□ 0.71
Smarce1O54941 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Smarce1O54941 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC19.47■□□□□ 0.71
Smarce1O54941 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC19.46■□□□□ 0.71
Smarce1O54941 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smarce1O54941 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smarce1O54941 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smarce1O54941 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Smarce1O54941 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smarce1O54941 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Smarce1O54941 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
Smarce1O54941 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC19.46■□□□□ 0.71
Smarce1O54941 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC19.46■□□□□ 0.71
Smarce1O54941 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19.46■□□□□ 0.71
Smarce1O54941 Gm29257-201ENSMUST00000186115 639 ntBASIC19.46■□□□□ 0.71
Smarce1O54941 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smarce1O54941 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smarce1O54941 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smarce1O54941 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC19.46■□□□□ 0.71
Smarce1O54941 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC19.46■□□□□ 0.71
Smarce1O54941 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC19.46■□□□□ 0.71
Smarce1O54941 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC19.46■□□□□ 0.71
Smarce1O54941 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smarce1O54941 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smarce1O54941 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smarce1O54941 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Smarce1O54941 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smarce1O54941 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Smarce1O54941 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smarce1O54941 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Smarce1O54941 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smarce1O54941 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Smarce1O54941 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smarce1O54941 Phf7-203ENSMUST00000226565 1971 ntBASIC19.45■□□□□ 0.7
Smarce1O54941 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smarce1O54941 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
Smarce1O54941 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC19.45■□□□□ 0.7
Smarce1O54941 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC19.45■□□□□ 0.7
Smarce1O54941 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Smarce1O54941 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smarce1O54941 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smarce1O54941 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smarce1O54941 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Smarce1O54941 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smarce1O54941 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Smarce1O54941 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smarce1O54941 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Smarce1O54941 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 Zfp264-201ENSMUST00000208656 1563 ntBASIC19.44■□□□□ 0.7
Smarce1O54941 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Smarce1O54941 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 Gm11539-201ENSMUST00000119837 557 ntBASIC19.44■□□□□ 0.7
Smarce1O54941 Mir5122-201ENSMUST00000175004 89 ntBASIC19.44■□□□□ 0.7
Smarce1O54941 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
Smarce1O54941 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC19.44■□□□□ 0.7
Smarce1O54941 Gm6583-201ENSMUST00000051117 2233 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Smarce1O54941 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
Smarce1O54941 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC19.44■□□□□ 0.7
Smarce1O54941 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smarce1O54941 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC19.43■□□□□ 0.7
Smarce1O54941 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Smarce1O54941 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC19.43■□□□□ 0.7
Smarce1O54941 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smarce1O54941 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smarce1O54941 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Smarce1O54941 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Smarce1O54941 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms