Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Gm12896-201ENSMUST00000118430 226 ntBASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Gm42545-201ENSMUST00000202755 922 ntBASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Gm18025-201ENSMUST00000221733 862 ntBASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav11A0A0B4J1J9 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Gm11249-201ENSMUST00000117071 859 ntBASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Zc3h14-204ENSMUST00000110105 3514 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Trav11A0A0B4J1J9 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Gm43859-201ENSMUST00000200075 1412 ntBASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Gm13158-201ENSMUST00000122007 736 ntBASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Gm10517-202ENSMUST00000192970 758 ntBASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Gm9694-201ENSMUST00000193347 1189 ntBASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Gm3807-201ENSMUST00000193520 1168 ntBASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC11.28□□□□□ -0.6
Trav11A0A0B4J1J9 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 23.4 ms