Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.96□□□□□ -1.77
VPS28Q9UK41 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
VPS28Q9UK41 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS28Q9UK41 SNORA4.1-201ENST00000364263 144 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 RPL32P23-201ENST00000397237 405 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 AL590704.1-201ENST00000402856 794 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 SNORA3.3-201ENST00000408712 125 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 AL365396.1-201ENST00000430854 671 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS28Q9UK41 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 AC068305.1-201ENST00000497406 726 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 RNU1-45P-201ENST00000517191 141 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 AC023632.4-201ENST00000517783 191 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 COX6CP8-201ENST00000522620 226 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 SNRPGP16-201ENST00000533275 226 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 PDCL2P2-201ENST00000533651 189 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 AL163642.2-201ENST00000604722 1019 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 AL391497.1-201ENST00000608671 547 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 AL356863.1-201ENST00000623378 1080 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 AP004289.2-201ENST00000444413 1457 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 UBE3AP2-201ENST00000429033 2259 ntBASIC3.96□□□□□ -1.78
VPS28Q9UK41 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS28Q9UK41 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS28Q9UK41 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS28Q9UK41 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS28Q9UK41 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS28Q9UK41 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS28Q9UK41 MIR423-201ENST00000362201 94 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 CGA-201ENST00000369582 729 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 DEFB109C-201ENST00000382575 264 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 DEFB109B-201ENST00000382656 264 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 RN7SKP156-201ENST00000410308 342 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 RHEBP3-201ENST00000411920 351 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 MTCO2P21-201ENST00000419780 677 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 XKRYP1-201ENST00000423438 492 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 XKRYP2-201ENST00000432915 492 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 KCTD9P3-201ENST00000434597 1169 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 MTND5P14-201ENST00000441481 1267 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 AL121871.1-201ENST00000443413 436 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC002381.1-201ENST00000447049 280 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 snoU13.8-201ENST00000458890 104 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS28Q9UK41 HMGB3P15-201ENST00000507326 574 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 RNA5SP216-201ENST00000516111 123 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC022695.1-201ENST00000522089 237 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 MTCO1P49-201ENST00000523429 802 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC034105.4-201ENST00000568304 277 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 FAM60BP-201ENST00000578364 658 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC006130.2-201ENST00000586202 326 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 AL596327.1-201ENST00000603629 213 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC013244.3-201ENST00000605614 388 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 AL355810.1-201ENST00000614629 552 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC079228.1-201ENST00000624774 1049 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS28Q9UK41 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS28Q9UK41 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS28Q9UK41 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS28Q9UK41 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
VPS28Q9UK41 AC011477.1-204ENST00000623416 1325 ntBASIC3.95□□□□□ -1.78
VPS28Q9UK41 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
VPS28Q9UK41 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS28Q9UK41 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms