Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC091925.2-201ENST00000625059 256 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 MIR1322-201ENST00000638013 71 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AL365440.1-201ENST00000436135 2167 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 AC007496.3-201ENST00000624987 3443 ntBASIC3.39□□□□□ -1.87
DDX28Q9NUL7 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
DDX28Q9NUL7 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 RNU4-92P-201ENST00000363783 136 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AC068533.2-201ENST00000411872 306 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 MTCO3P12-201ENST00000416718 547 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 Z97055.1-201ENST00000419730 712 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 VDAC1P3-201ENST00000434069 851 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 RPL7P52-201ENST00000449200 742 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AC026410.2-201ENST00000460281 156 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AC084198.1-201ENST00000477747 402 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 TRBV12-2-201ENST00000489763 344 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AC010625.1-201ENST00000511296 403 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 RNU6-27P-201ENST00000516146 107 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 SNORA31.20-201ENST00000517111 133 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 RNU6-1073P-201ENST00000517182 106 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 IGKV2D-19-201ENST00000523346 262 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AL049838.1-201ENST00000563647 981 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AC023813.2-201ENST00000564321 469 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AC053481.3-201ENST00000577881 843 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 MIR5685-201ENST00000579080 79 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.38□□□□□ -1.87
DDX28Q9NUL7 XIAPP1-201ENST00000603162 600 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 MTND3P19-201ENST00000603825 345 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AL137849.1-201ENST00000604767 169 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AL590282.1-201ENST00000610379 1136 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AC109809.1-201ENST00000619665 545 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AC018755.4-201ENST00000619715 454 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 AC116096.1-201ENST00000566804 2314 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 MAPK10-362ENST00000641864 4484 ntBASIC3.38□□□□□ -1.87
DDX28Q9NUL7 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AC099786.3-201ENST00000565735 1410 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 RNU6-1122P-201ENST00000384449 107 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 RNU2-15P-201ENST00000410692 191 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 ZNF736P2Y-201ENST00000416040 1279 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 GLRXP1-201ENST00000423261 334 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 RPL21P66-201ENST00000426566 466 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 USP9YP11-201ENST00000427537 717 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 PSMA6P3-201ENST00000428242 164 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AL645638.1-201ENST00000440519 361 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 TRIM60P18-201ENST00000441518 828 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 SSXP4-201ENST00000451349 245 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 OFD1P3Y-201ENST00000453312 783 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AC010285.1-201ENST00000470580 392 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 RPS15AP17-201ENST00000470598 390 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 RPS3AP6-201ENST00000484430 795 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 FTH1P21-201ENST00000512179 511 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 SUMO2P20-201ENST00000520803 283 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 HSPA8P13-201ENST00000523715 472 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 OR5AP1P-201ENST00000529730 940 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AC011602.1-201ENST00000546484 331 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 TGIF1P1-201ENST00000558095 802 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AC024220.1-201ENST00000603675 484 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AC055876.5-201ENST00000605667 259 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AC080013.4-201ENST00000607624 649 ntBASIC3.37□□□□□ -1.87
DDX28Q9NUL7 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.37□□□□□ -1.87
DDX28Q9NUL7 AL451074.6-201ENST00000608512 729 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 128.3 ms