Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 RPS4XP15-201ENST00000489210 795 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AC026414.1-201ENST00000504046 698 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 VN1R104P-201ENST00000505115 1009 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 HMGN1P11-201ENST00000508668 303 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 RN7SKP282-201ENST00000516824 299 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 snoZ278.1-201ENST00000517059 112 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AC022695.1-201ENST00000522089 237 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AC044913.1-201ENST00000557200 430 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 AC019176.2-201ENST00000611579 315 ntBASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
ZNF540Q8NDQ6 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 DEFB108F-201ENST00000344638 222 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 RNU5B-1-201ENST00000363286 116 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 MIR506-201ENST00000384998 124 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC245052.5-201ENST00000416320 649 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC013410.2-201ENST00000422627 201 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC091862.1-201ENST00000438016 1100 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 MUPP-201ENST00000438111 566 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 SDR42E1P3-201ENST00000438345 502 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 NOTCH2P1-201ENST00000443481 624 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AL359385.1-201ENST00000456509 365 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 RPS4XP2-201ENST00000458402 793 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC034236.1-201ENST00000469891 373 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC084357.1-201ENST00000473404 255 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 MTND3P3-201ENST00000505004 126 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 FABP5P12-201ENST00000515543 389 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 SNORA70.16-201ENST00000516390 95 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AP001189.2-201ENST00000527320 189 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 DEFB108D-201ENST00000527787 222 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC008011.1-201ENST00000545989 227 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 MIR3921-201ENST00000577308 85 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC090330.1-201ENST00000588646 764 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 GLUD1P4-201ENST00000590914 418 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 VN1R87P-201ENST00000596706 487 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 DUXAP4-201ENST00000603046 613 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC091946.2-201ENST00000606105 291 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC097504.2-201ENST00000608088 454 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC008759.3-201ENST00000613300 508 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC007275.1-201ENST00000621243 671 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AL138960.2-201ENST00000625145 535 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 AC068647.1-201ENST00000489539 2265 ntBASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.32□□□□□ -1.88
ZNF540Q8NDQ6 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AC008568.2-201ENST00000623862 2313 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 MIR30B-201ENST00000384850 88 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 RNU6-1300P-201ENST00000391046 108 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 RPL22P22-201ENST00000395439 379 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 ARF4P3-201ENST00000397387 509 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 VN1R10P-201ENST00000447106 875 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AL031183.1-201ENST00000457667 207 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 RPS29P12-201ENST00000460178 152 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AC104164.3-201ENST00000467363 1258 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 SETP11-201ENST00000473027 690 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 ACTR3P3-201ENST00000480448 893 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AC092185.1-201ENST00000491371 97 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 AL359273.1-201ENST00000510918 627 ntBASIC3.31□□□□□ -1.88
ZNF540Q8NDQ6 RNU2-27P-201ENST00000516185 142 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 76.4 ms