Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC1.96□□□□□ -2.1
USF3Q68DE3 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC1.96□□□□□ -2.1
USF3Q68DE3 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC1.96□□□□□ -2.1
USF3Q68DE3 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC1.96□□□□□ -2.1
USF3Q68DE3 AC104237.2-201ENST00000612456 443 ntBASIC1.96□□□□□ -2.1
USF3Q68DE3 AL353997.5-201ENST00000618886 171 ntBASIC1.96□□□□□ -2.1
USF3Q68DE3 MIR6766-201ENST00000622641 72 ntBASIC1.96□□□□□ -2.1
USF3Q68DE3 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC1.96□□□□□ -2.1
USF3Q68DE3 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
USF3Q68DE3 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
USF3Q68DE3 AL512283.1-201ENST00000606756 1384 ntBASIC1.96□□□□□ -2.1
USF3Q68DE3 AC091564.4-201ENST00000533934 2194 ntBASIC1.96□□□□□ -2.1
USF3Q68DE3 AL021368.2-201ENST00000606125 5352 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 MTND5P23-201ENST00000430812 1655 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 Y_RNA.4-201ENST00000362333 112 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 AC013470.3-201ENST00000420252 1194 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC1.95□□□□□ -2.1
USF3Q68DE3 AC096638.1-201ENST00000444678 216 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 TRBV1-201ENST00000476502 284 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 AP000926.1-201ENST00000479573 241 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC1.95□□□□□ -2.1
USF3Q68DE3 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
USF3Q68DE3 ZDHHC20P3-201ENST00000531576 336 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 AC074029.1-201ENST00000552531 1044 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 AC044913.1-201ENST00000557200 430 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC1.95□□□□□ -2.1
USF3Q68DE3 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
USF3Q68DE3 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC1.95□□□□□ -2.1
USF3Q68DE3 Y_RNA.140-201ENST00000363474 103 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 RNU1-51P-201ENST00000365345 176 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 AL591416.1-201ENST00000404015 867 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
USF3Q68DE3 RPL23AP36-201ENST00000413895 458 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 AC009961.3-201ENST00000449832 765 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC1.95□□□□□ -2.1
USF3Q68DE3 RPL36AP51-201ENST00000487216 318 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 AC106872.3-201ENST00000495104 446 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
USF3Q68DE3 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC1.95□□□□□ -2.1
USF3Q68DE3 AC026464.5-201ENST00000562497 722 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
USF3Q68DE3 AP001004.1-201ENST00000582468 324 ntBASIC1.95□□□□□ -2.1
USF3Q68DE3 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.95□□□□□ -2.1
USF3Q68DE3 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
USF3Q68DE3 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC1.95□□□□□ -2.1
USF3Q68DE3 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC1.95□□□□□ -2.1
USF3Q68DE3 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
USF3Q68DE3 MIR365B-201ENST00000362317 111 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 Y_RNA.595-201ENST00000410403 105 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 AL138785.1-201ENST00000425821 331 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC1.94□□□□□ -2.1
USF3Q68DE3 AC091179.1-201ENST00000461606 579 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 AC068587.2-201ENST00000478386 781 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 ENSA-210ENST00000503241 574 ntTSL 3 BASIC1.94□□□□□ -2.1
USF3Q68DE3 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC1.94□□□□□ -2.1
USF3Q68DE3 AC034244.2-201ENST00000514668 858 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC1.94□□□□□ -2.1
USF3Q68DE3 AC007336.1-201ENST00000576365 3828 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.94□□□□□ -2.1
USF3Q68DE3 AL359198.2-201ENST00000611836 194 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
USF3Q68DE3 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC1.94□□□□□ -2.1
USF3Q68DE3 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.94□□□□□ -2.1
USF3Q68DE3 RNU6-76P-201ENST00000384060 104 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 AL354719.1-201ENST00000406535 843 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 AC107081.1-201ENST00000414975 361 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 RAD23BP2-201ENST00000416003 1207 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC1.94□□□□□ -2.1
USF3Q68DE3 SETP8-201ENST00000435341 628 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 AL138787.1-202ENST00000437804 898 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC1.94□□□□□ -2.1
USF3Q68DE3 GAPDHP39-201ENST00000481866 979 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
USF3Q68DE3 THAP6-203ENST00000502620 582 ntTSL 3 BASIC1.94□□□□□ -2.1
USF3Q68DE3 AC104090.1-201ENST00000506341 1171 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 XKRY-201ENST00000510392 1100 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 TTC39CP1-201ENST00000512513 755 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 AC104986.1-201ENST00000517978 436 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC1.94□□□□□ -2.1
USF3Q68DE3 MIR5007-201ENST00000583098 95 ntBASIC1.94□□□□□ -2.1
USF3Q68DE3 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC1.94□□□□□ -2.1
USF3Q68DE3 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC1.94□□□□□ -2.1
USF3Q68DE3 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC1.94□□□□□ -2.1
USF3Q68DE3 RANP7-201ENST00000418085 644 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC1.93□□□□□ -2.1
USF3Q68DE3 RPL21P2-201ENST00000440049 481 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 CFTRP1-201ENST00000456646 183 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC1.93□□□□□ -2.1
USF3Q68DE3 VTA1P2-201ENST00000520205 911 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC1.93□□□□□ -2.1
USF3Q68DE3 AL136981.2-201ENST00000617319 734 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC1.93□□□□□ -2.1
USF3Q68DE3 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USF3Q68DE3 AC016717.2-201ENST00000609089 5141 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC1.93□□□□□ -2.1
USF3Q68DE3 U8.9-201ENST00000365667 134 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 Z98742.2-201ENST00000431564 187 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 AC010881.1-201ENST00000433830 235 ntBASIC1.93□□□□□ -2.1
USF3Q68DE3 RPL23AP42-201ENST00000471152 471 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms