Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 TMEM251P1-201ENST00000503717 318 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 AC114981.1-201ENST00000503897 678 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.03□□□□□ -1.76
USP41Q3LFD5 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.03□□□□□ -1.76
USP41Q3LFD5 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC4.03□□□□□ -1.76
USP41Q3LFD5 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.03□□□□□ -1.76
USP41Q3LFD5 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.03□□□□□ -1.76
USP41Q3LFD5 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.03□□□□□ -1.76
USP41Q3LFD5 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.03□□□□□ -1.76
USP41Q3LFD5 AC012435.1-202ENST00000568772 240 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 AC244505.7-201ENST00000599675 272 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 Z99497.2-201ENST00000603634 310 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 AP000811.1-201ENST00000603803 651 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 CLPTM1LP1-201ENST00000604519 484 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 AL163642.2-201ENST00000604722 1019 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 AC018714.1-201ENST00000605028 208 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 AC110741.2-201ENST00000605278 268 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 RNU1-30P-201ENST00000606575 163 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 AC092354.2-201ENST00000607786 514 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 AC009318.4-201ENST00000620496 486 ntBASIC4.03□□□□□ -1.76
USP41Q3LFD5 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
USP41Q3LFD5 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.03□□□□□ -1.76
USP41Q3LFD5 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP41Q3LFD5 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
USP41Q3LFD5 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP41Q3LFD5 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
USP41Q3LFD5 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP41Q3LFD5 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP41Q3LFD5 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP41Q3LFD5 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.77
USP41Q3LFD5 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.03□□□□□ -1.77
USP41Q3LFD5 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.77
USP41Q3LFD5 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
USP41Q3LFD5 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP41Q3LFD5 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
USP41Q3LFD5 Y_RNA.18-201ENST00000362461 102 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 RNA5SP51-201ENST00000364750 119 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP41Q3LFD5 CYCSP45-201ENST00000402289 315 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 DNAJA1P2-201ENST00000421360 1197 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AL035407.1-201ENST00000429211 571 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 AL445567.1-201ENST00000439121 144 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 RPS3AP46-201ENST00000448352 682 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 ZNF736P5Y-201ENST00000451173 805 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 PRSS3P4-201ENST00000453323 162 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AL645939.1-201ENST00000453429 797 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC026410.2-201ENST00000460281 156 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 RN7SL93P-201ENST00000463035 293 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 PABPC1P3-201ENST00000469174 459 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC110768.1-201ENST00000509222 400 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 RNU6-678P-201ENST00000516832 109 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC104986.1-201ENST00000517978 436 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 IGKV2D-36-201ENST00000518643 226 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC239860.2-201ENST00000525886 270 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC092851.1-201ENST00000535964 478 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 SRGNP1-201ENST00000603392 451 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC083899.3-201ENST00000603413 594 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC072039.2-201ENST00000608883 439 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC122133.1-201ENST00000613964 233 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC090116.1-201ENST00000615679 446 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 AC244205.2-202ENST00000635781 342 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 MIR3974-201ENST00000637126 96 ntBASIC4.02□□□□□ -1.77
USP41Q3LFD5 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP41Q3LFD5 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
USP41Q3LFD5 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP41Q3LFD5 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP41Q3LFD5 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USP41Q3LFD5 GDI2P1-201ENST00000429312 1336 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 RPS4XP5-202ENST00000449995 1334 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.01□□□□□ -1.77
USP41Q3LFD5 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USP41Q3LFD5 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP41Q3LFD5 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USP41Q3LFD5 SNORD82-201ENST00000365530 70 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP41Q3LFD5 RNU6-761P-201ENST00000384148 107 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 RNU5A-2P-201ENST00000384337 116 ntBASIC4.01□□□□□ -1.77
USP41Q3LFD5 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms