Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
BRCA1P38398 Y_RNA.4-201ENST00000362333 112 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 RNU6-805P-201ENST00000365643 106 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 OR2AS1P-201ENST00000427827 319 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 USP9YP7-201ENST00000436723 430 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 RPS7P5-201ENST00000441482 581 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.18□□□□□ -1.9
BRCA1P38398 USP9YP32-201ENST00000452432 430 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 RPL9P32-201ENST00000464118 620 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 AC133963.2-201ENST00000513686 578 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.18□□□□□ -1.9
BRCA1P38398 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.18□□□□□ -1.9
BRCA1P38398 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC3.18□□□□□ -1.9
BRCA1P38398 AC025918.2-201ENST00000558683 763 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 AC015712.3-201ENST00000559380 164 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 ZNF861P-201ENST00000588126 639 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 AC018618.2-201ENST00000604770 446 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC3.18□□□□□ -1.9
BRCA1P38398 MIR7111-201ENST00000619751 72 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 AC083865.1-201ENST00000636634 831 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 PNPT1P2-201ENST00000456768 2050 ntBASIC3.18□□□□□ -1.9
BRCA1P38398 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
BRCA1P38398 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
BRCA1P38398 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC3.17□□□□□ -1.9
BRCA1P38398 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
BRCA1P38398 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
BRCA1P38398 U3.6-201ENST00000363622 211 ntBASIC3.17□□□□□ -1.9
BRCA1P38398 RNU6-452P-201ENST00000384406 107 ntBASIC3.17□□□□□ -1.9
BRCA1P38398 MIR27B-201ENST00000385129 97 ntBASIC3.17□□□□□ -1.9
BRCA1P38398 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.17□□□□□ -1.9
BRCA1P38398 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC3.17□□□□□ -1.9
BRCA1P38398 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC3.17□□□□□ -1.9
BRCA1P38398 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC3.17□□□□□ -1.9
BRCA1P38398 RNU7-170P-201ENST00000459303 61 ntBASIC3.17□□□□□ -1.9
BRCA1P38398 RPL21P71-201ENST00000465598 459 ntBASIC3.17□□□□□ -1.9
BRCA1P38398 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
BRCA1P38398 HAUS1P3-201ENST00000523909 662 ntBASIC3.17□□□□□ -1.9
BRCA1P38398 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC3.17□□□□□ -1.9
BRCA1P38398 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.17□□□□□ -1.9
BRCA1P38398 AC009063.1-201ENST00000563342 702 ntBASIC3.17□□□□□ -1.9
BRCA1P38398 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC3.17□□□□□ -1.9
BRCA1P38398 BNIP3P8-201ENST00000597863 560 ntBASIC3.17□□□□□ -1.9
BRCA1P38398 FAM157B-203ENST00000639350 358 ntBASIC3.17□□□□□ -1.9
BRCA1P38398 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.17□□□□□ -1.9
BRCA1P38398 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.17□□□□□ -1.9
BRCA1P38398 RPL21P132-201ENST00000331267 462 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 Y_RNA.226-201ENST00000364337 114 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
BRCA1P38398 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.16□□□□□ -1.9
BRCA1P38398 ACAP2-IT1-201ENST00000419899 690 ntTSL 3 BASIC3.16□□□□□ -1.9
BRCA1P38398 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.16□□□□□ -1.9
BRCA1P38398 RPS29P6-201ENST00000438196 145 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 RPL23AP14-201ENST00000468281 468 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 AP000893.1-201ENST00000474462 794 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
BRCA1P38398 AC093770.1-201ENST00000511559 571 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 RNU6-751P-201ENST00000516382 101 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC3.16□□□□□ -1.9
BRCA1P38398 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.16□□□□□ -1.9
BRCA1P38398 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
BRCA1P38398 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.16□□□□□ -1.9
BRCA1P38398 AC115085.1-201ENST00000588924 229 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
BRCA1P38398 DCAF13P3-201ENST00000561147 1334 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 AC109315.1-201ENST00000584143 1347 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
BRCA1P38398 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
BRCA1P38398 MTCO1P14-201ENST00000441695 1559 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 XPOTP1-201ENST00000443317 2398 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 TMEM161BP1-201ENST00000457388 1457 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.16□□□□□ -1.9
BRCA1P38398 AL512646.1-201ENST00000269395 1077 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.16□□□□□ -1.9
BRCA1P38398 RPL21P3-201ENST00000395517 478 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 RPL31P1-201ENST00000398116 372 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC3.16□□□□□ -1.9
BRCA1P38398 AL645939.1-201ENST00000453429 797 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 AC146507.2-201ENST00000460608 476 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 AC092045.1-201ENST00000495716 1231 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.16□□□□□ -1.9
BRCA1P38398 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.16□□□□□ -1.9
BRCA1P38398 AC068657.1-201ENST00000520807 306 ntBASIC3.16□□□□□ -1.9
BRCA1P38398 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
BRCA1P38398 RPS3AP26-201ENST00000398259 784 ntBASIC3.15□□□□□ -1.91
BRCA1P38398 RNU2-6P-201ENST00000411404 190 ntBASIC3.15□□□□□ -1.91
BRCA1P38398 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC3.15□□□□□ -1.91
BRCA1P38398 XKRY2-201ENST00000442362 1093 ntBASIC3.15□□□□□ -1.91
BRCA1P38398 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC3.15□□□□□ -1.91
BRCA1P38398 Z77249.1-201ENST00000444622 1175 ntBASIC3.15□□□□□ -1.91
BRCA1P38398 AC125238.1-201ENST00000448842 249 ntBASIC3.15□□□□□ -1.91
BRCA1P38398 NDUFS5P3-201ENST00000450668 321 ntBASIC3.15□□□□□ -1.91
BRCA1P38398 MTND3P4-201ENST00000453537 303 ntBASIC3.15□□□□□ -1.91
BRCA1P38398 HMGN2P23-201ENST00000456759 269 ntBASIC3.15□□□□□ -1.91
BRCA1P38398 AC068587.2-201ENST00000478386 781 ntBASIC3.15□□□□□ -1.91
BRCA1P38398 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC3.15□□□□□ -1.91
BRCA1P38398 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC3.15□□□□□ -1.91
BRCA1P38398 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.15□□□□□ -1.91
BRCA1P38398 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC3.15□□□□□ -1.91
BRCA1P38398 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.15□□□□□ -1.91
BRCA1P38398 AP003102.1-201ENST00000525638 661 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms