Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC244100.1-202ENST00000621554 382 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AL136164.3-201ENST00000624429 3978 ntBASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
CCDC9Q9Y3X0 OR51H2P-202ENST00000641424 3046 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 RNU6-1042P-201ENST00000384204 107 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 MIR607-201ENST00000385241 96 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 MIR708-201ENST00000390708 88 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 RNU6-882P-201ENST00000391025 103 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 SNORA48.4-201ENST00000391089 134 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 U3.32-201ENST00000408116 212 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 MTCO3P41-201ENST00000414801 328 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 AL451139.1-201ENST00000434718 346 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 RPL23AP2-201ENST00000471227 466 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 TMED11P-201ENST00000479478 690 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 AC096751.1-202ENST00000502691 1067 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 AC108475.1-201ENST00000507880 950 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 AC021146.1-201ENST00000511202 716 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 AC087683.1-201ENST00000591187 441 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 CKS1BP3-201ENST00000600888 237 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 AL022099.1-201ENST00000604551 712 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 AC007038.2-201ENST00000608095 740 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 AL590240.3-201ENST00000621416 943 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 AL353748.2-201ENST00000622148 471 ntBASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CCDC9Q9Y3X0 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 RNU6-173P-201ENST00000364215 104 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 RNU6-348P-201ENST00000384386 107 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 RNU6-297P-201ENST00000384636 107 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 PGBD4P3-201ENST00000440731 581 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 MTND6P13-201ENST00000443510 523 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 AC244505.5-201ENST00000443639 207 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 AC041039.1-201ENST00000485656 536 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 RPS3AP50-201ENST00000487064 803 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 CREM-238ENST00000488741 651 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 IL7R-208ENST00000511982 612 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 AC022483.1-201ENST00000514020 567 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 Y_RNA.719-201ENST00000517156 106 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 AP004242.1-201ENST00000533701 349 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 OR4T1P-201ENST00000554933 911 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 HMGN1P30-201ENST00000589286 268 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 AC109347.2-201ENST00000610220 349 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 UBE2Q2P2-203ENST00000613592 761 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 ADAM24P-201ENST00000398655 2101 ntBASIC6.16□□□□□ -1.42
CCDC9Q9Y3X0 OSBPL9P4-201ENST00000371707 1800 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 SNORA51.2-201ENST00000364595 132 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 MIR19A-201ENST00000384878 82 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 RNU2-16P-201ENST00000410712 136 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 AC079780.1-201ENST00000428259 207 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 AL117339.2-201ENST00000430475 180 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 AC073614.1-201ENST00000438690 650 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 MTND1P3-201ENST00000484956 952 ntBASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC6.15□□□□□ -1.42
CCDC9Q9Y3X0 RN7SKP298-201ENST00000515950 94 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms