Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AC010620.2-201ENST00000600135 313 ntBASIC2.31□□□□□ -2.04
SCN3AQ9NY46 RMST_5.1-201ENST00000618704 126 ntBASIC2.31□□□□□ -2.04
SCN3AQ9NY46 AC092159.4-201ENST00000624944 550 ntBASIC2.31□□□□□ -2.04
SCN3AQ9NY46 AC000367.1-201ENST00000452711 1766 ntBASIC2.31□□□□□ -2.04
SCN3AQ9NY46 MIR6073-201ENST00000352083 89 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 MIR320B1-201ENST00000390209 79 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 RN7SKP223-201ENST00000410582 62 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC007563.3-201ENST00000433233 371 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 COX6CP2-201ENST00000444980 225 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 RPL36AP33-201ENST00000450395 310 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC104472.2-201ENST00000469035 601 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 MIR4513-201ENST00000581077 86 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 FAM60CP-201ENST00000591086 664 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC011468.4-201ENST00000603942 409 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC103810.6-201ENST00000606708 136 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC005156.1-201ENST00000613371 573 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AL158825.1-201ENST00000414735 521 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AP001180.3-201ENST00000582221 145 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 SNRPGP15-201ENST00000600149 222 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 AC004944.1-201ENST00000517807 3059 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.3□□□□□ -2.04
SCN3AQ9NY46 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AL359693.1-201ENST00000614959 2407 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 FRG1BP-201ENST00000278882 761 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 RSL24D1P4-201ENST00000400938 484 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AC006483.1-201ENST00000487308 313 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AC118465.1-201ENST00000513820 1271 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 MIR3670-2-201ENST00000582974 65 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 MIR3670-1-201ENST00000584160 65 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 MIR3670-3-201ENST00000584855 65 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AP003117.1-201ENST00000602771 554 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AL627309.6-201ENST00000606857 840 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 MIR3670-4-201ENST00000612260 65 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AC091046.2-201ENST00000620775 665 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AC046144.1-201ENST00000478559 1853 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 RNU6-317P-201ENST00000384031 107 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 RPL5P13-201ENST00000462840 709 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 RPL31P50-201ENST00000471002 296 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 RPS27AP9-201ENST00000477681 438 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 RN7SL429P-201ENST00000479090 223 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 RN7SL489P-201ENST00000486185 223 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 RN7SL327P-201ENST00000488659 223 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.29□□□□□ -2.04
SCN3AQ9NY46 AC011472.4-201ENST00000615848 491 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 RN7SL853P-201ENST00000617250 223 ntBASIC2.29□□□□□ -2.04
SCN3AQ9NY46 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
SCN3AQ9NY46 MTND5P7-201ENST00000413558 1798 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 AL359715.4-201ENST00000606629 1436 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.28□□□□□ -2.04
SCN3AQ9NY46 CRISP3-201ENST00000263045 2170 ntAPPRIS P3 TSL 1 (best) BASIC2.28□□□□□ -2.04
SCN3AQ9NY46 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
SCN3AQ9NY46 RNU1-51P-201ENST00000365345 176 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 MRPL50P2-201ENST00000416821 482 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 MYL8P-204ENST00000431574 518 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 RPL23AP33-201ENST00000442301 452 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 AL513328.1-201ENST00000446460 224 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 VN1R48P-201ENST00000448149 1036 ntBASIC2.28□□□□□ -2.04
SCN3AQ9NY46 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
SCN3AQ9NY46 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC2.28□□□□□ -2.04
SCN3AQ9NY46 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms