Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXA3P55318 AC008494.2-201ENST00000514544 370 ntBASIC2.03□□□□□ -2.08
FOXA3P55318 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.03□□□□□ -2.08
FOXA3P55318 RN7SKP96-201ENST00000516948 297 ntBASIC2.03□□□□□ -2.08
FOXA3P55318 AC023632.4-201ENST00000517783 191 ntBASIC2.03□□□□□ -2.08
FOXA3P55318 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC2.03□□□□□ -2.08
FOXA3P55318 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.03□□□□□ -2.08
FOXA3P55318 AP003385.6-201ENST00000531603 374 ntBASIC2.03□□□□□ -2.08
FOXA3P55318 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXA3P55318 SMILR-201ENST00000533992 553 ntTSL 4 BASIC2.03□□□□□ -2.08
FOXA3P55318 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXA3P55318 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC2.03□□□□□ -2.08
FOXA3P55318 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXA3P55318 POLR2KP1-201ENST00000553226 168 ntBASIC2.03□□□□□ -2.08
FOXA3P55318 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC2.03□□□□□ -2.08
FOXA3P55318 AC090751.1-201ENST00000566966 267 ntBASIC2.03□□□□□ -2.08
FOXA3P55318 AC009163.5-201ENST00000575421 637 ntBASIC2.03□□□□□ -2.08
FOXA3P55318 TPMTP1-201ENST00000592307 737 ntBASIC2.03□□□□□ -2.08
FOXA3P55318 DUXAP3-201ENST00000603616 594 ntBASIC2.03□□□□□ -2.08
FOXA3P55318 AL137843.1-201ENST00000605078 385 ntBASIC2.03□□□□□ -2.08
FOXA3P55318 AC026422.1-201ENST00000623961 452 ntBASIC2.03□□□□□ -2.08
FOXA3P55318 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.03□□□□□ -2.08
FOXA3P55318 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
FOXA3P55318 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.03□□□□□ -2.09
FOXA3P55318 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
FOXA3P55318 MAPK10-266ENST00000641066 6555 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 AC109315.1-201ENST00000584143 1347 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 ZNF271P-202ENST00000465539 1970 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA3P55318 RNVU1-3-201ENST00000364313 161 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 RNA5SP210-201ENST00000391034 120 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 PRRC2CP1-201ENST00000404428 159 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 MTCO3P12-201ENST00000416718 547 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA3P55318 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA3P55318 AC129850.1-201ENST00000436203 508 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 AL359073.1-201ENST00000448036 403 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC2.02□□□□□ -2.09
FOXA3P55318 BTF3P5-201ENST00000457252 467 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 AL031183.1-201ENST00000457667 207 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 RPL30P14-201ENST00000482744 348 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 AC104687.1-201ENST00000485829 412 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.02□□□□□ -2.09
FOXA3P55318 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA3P55318 AC008716.1-201ENST00000511084 513 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 AC008885.1-201ENST00000514930 301 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 RNA5SP367-201ENST00000516557 118 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 AC009812.2-201ENST00000517657 457 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA3P55318 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA3P55318 PSMA2P1-201ENST00000526365 646 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA3P55318 AC123904.3-201ENST00000547218 814 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXA3P55318 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC2.02□□□□□ -2.09
FOXA3P55318 OR4G1P-201ENST00000588632 938 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 GLUD1P4-201ENST00000590914 418 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 AC009570.1-201ENST00000609599 745 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 VN1R7P-201ENST00000619242 903 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
FOXA3P55318 MIR6810-201ENST00000622701 70 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
FOXA3P55318 FTO-223ENST00000640179 210 ntTSL 5 BASIC2.02□□□□□ -2.09
FOXA3P55318 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXA3P55318 AC090740.1-201ENST00000623193 2262 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 MTND5P28-201ENST00000438005 1594 ntBASIC2.02□□□□□ -2.09
FOXA3P55318 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
FOXA3P55318 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
FOXA3P55318 AC135776.4-201ENST00000624300 1904 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
FOXA3P55318 RNU6-1243P-201ENST00000364028 107 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 MIR627-201ENST00000384979 97 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 SNORA11B-201ENST00000408175 129 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 AC096533.1-201ENST00000411645 353 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA3P55318 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA3P55318 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.01□□□□□ -2.09
FOXA3P55318 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
FOXA3P55318 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA3P55318 NIPA2P5-201ENST00000452282 464 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 RN7SL542P-201ENST00000467147 294 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
FOXA3P55318 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
FOXA3P55318 AC021087.2-201ENST00000504656 1203 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC2.01□□□□□ -2.09
FOXA3P55318 RNA5SP402-201ENST00000517148 110 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.01□□□□□ -2.09
FOXA3P55318 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
FOXA3P55318 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC2.01□□□□□ -2.09
FOXA3P55318 EIF4EP5-201ENST00000528228 640 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA3P55318 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC2.01□□□□□ -2.09
FOXA3P55318 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC2.01□□□□□ -2.09
FOXA3P55318 MIR5680-201ENST00000577577 84 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 MIR5194-201ENST00000582634 120 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 MIR5092-201ENST00000583139 88 ntBASIC2.01□□□□□ -2.09
FOXA3P55318 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC2.01□□□□□ -2.09
FOXA3P55318 U73023.1-201ENST00000603134 700 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms