Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CTCFP49711 RNU6-657P-201ENST00000383904 107 ntBASIC4.39□□□□□ -1.71
CTCFP49711 RNU6-1226P-201ENST00000384317 107 ntBASIC4.39□□□□□ -1.71
CTCFP49711 RPL5P18-201ENST00000406671 891 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AC069218.2-201ENST00000411665 344 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AC068533.2-201ENST00000411872 306 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AMD1P2-201ENST00000412936 992 ntBASIC4.39□□□□□ -1.71
CTCFP49711 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC4.39□□□□□ -1.71
CTCFP49711 SDCBPP2-201ENST00000424643 885 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AC096632.1-201ENST00000427395 310 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.39□□□□□ -1.71
CTCFP49711 SETD6P1-201ENST00000444575 317 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.39□□□□□ -1.71
CTCFP49711 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.39□□□□□ -1.71
CTCFP49711 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC4.39□□□□□ -1.71
CTCFP49711 RPL27AP5-201ENST00000469428 449 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AC021146.5-201ENST00000503544 545 ntBASIC4.39□□□□□ -1.71
CTCFP49711 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CTCFP49711 MTCYBP37-201ENST00000510642 1133 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AC079395.1-201ENST00000510981 262 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AC116353.3-201ENST00000511215 249 ntBASIC4.39□□□□□ -1.71
CTCFP49711 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC4.39□□□□□ -1.71
CTCFP49711 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC4.39□□□□□ -1.71
CTCFP49711 RNU5A-4P-201ENST00000516588 111 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.39□□□□□ -1.71
CTCFP49711 AC022695.1-201ENST00000522089 237 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AC087276.1-201ENST00000529659 480 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AC092851.1-201ENST00000535964 478 ntBASIC4.39□□□□□ -1.71
CTCFP49711 OR6C73P-201ENST00000546432 358 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AC010198.2-201ENST00000550612 259 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AL389895.1-201ENST00000554127 252 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC4.39□□□□□ -1.71
CTCFP49711 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.39□□□□□ -1.71
CTCFP49711 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.39□□□□□ -1.71
CTCFP49711 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.39□□□□□ -1.71
CTCFP49711 AL355493.4-201ENST00000618530 292 ntBASIC4.39□□□□□ -1.71
CTCFP49711 AC097520.1-201ENST00000624435 385 ntBASIC4.39□□□□□ -1.71
CTCFP49711 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.39□□□□□ -1.71
CTCFP49711 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CTCFP49711 AC107982.1-201ENST00000507171 1300 ntBASIC4.39□□□□□ -1.71
CTCFP49711 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.39□□□□□ -1.71
CTCFP49711 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CTCFP49711 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CTCFP49711 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.38□□□□□ -1.71
CTCFP49711 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.38□□□□□ -1.71
CTCFP49711 SNORD113-6-201ENST00000363345 75 ntBASIC4.38□□□□□ -1.71
CTCFP49711 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
CTCFP49711 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
CTCFP49711 RNA5SP293-201ENST00000410527 113 ntBASIC4.38□□□□□ -1.71
CTCFP49711 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CTCFP49711 ATP5F1P1-201ENST00000433775 569 ntBASIC4.38□□□□□ -1.71
CTCFP49711 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CTCFP49711 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.38□□□□□ -1.71
CTCFP49711 FABP3P2-201ENST00000453169 399 ntBASIC4.38□□□□□ -1.71
CTCFP49711 RN7SL585P-201ENST00000470538 280 ntBASIC4.38□□□□□ -1.71
CTCFP49711 KLRA1P-201ENST00000503499 986 ntBASIC4.38□□□□□ -1.71
CTCFP49711 AC098862.1-201ENST00000504991 413 ntBASIC4.38□□□□□ -1.71
CTCFP49711 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CTCFP49711 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.38□□□□□ -1.71
CTCFP49711 PTGES3P3-201ENST00000511479 482 ntBASIC4.38□□□□□ -1.71
CTCFP49711 PHBP14-201ENST00000512887 367 ntBASIC4.38□□□□□ -1.71
CTCFP49711 MTCO1P30-201ENST00000515244 580 ntBASIC4.38□□□□□ -1.71
CTCFP49711 AC104057.1-201ENST00000515547 497 ntBASIC4.38□□□□□ -1.71
CTCFP49711 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CTCFP49711 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC4.38□□□□□ -1.71
CTCFP49711 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC4.38□□□□□ -1.71
CTCFP49711 AC009101.1-201ENST00000568135 242 ntBASIC4.38□□□□□ -1.71
CTCFP49711 VN1R78P-201ENST00000597393 564 ntBASIC4.38□□□□□ -1.71
CTCFP49711 AC097478.2-201ENST00000610572 514 ntBASIC4.38□□□□□ -1.71
CTCFP49711 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.38□□□□□ -1.71
CTCFP49711 MIR4278-201ENST00000636094 69 ntBASIC4.38□□□□□ -1.71
CTCFP49711 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
CTCFP49711 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.38□□□□□ -1.71
CTCFP49711 AC008725.1-201ENST00000605123 2263 ntBASIC4.38□□□□□ -1.71
CTCFP49711 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
CTCFP49711 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
CTCFP49711 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CTCFP49711 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CTCFP49711 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
CTCFP49711 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.37□□□□□ -1.71
CTCFP49711 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.37□□□□□ -1.71
CTCFP49711 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
CTCFP49711 FAM133CP-201ENST00000332869 704 ntBASIC4.37□□□□□ -1.71
CTCFP49711 RNU6-621P-201ENST00000364752 109 ntBASIC4.37□□□□□ -1.71
CTCFP49711 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
CTCFP49711 AL450338.1-201ENST00000407987 512 ntBASIC4.37□□□□□ -1.71
CTCFP49711 AC073264.1-201ENST00000411508 416 ntBASIC4.37□□□□□ -1.71
CTCFP49711 MTND4P22-201ENST00000413116 1169 ntBASIC4.37□□□□□ -1.71
CTCFP49711 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC4.37□□□□□ -1.71
CTCFP49711 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.37□□□□□ -1.71
CTCFP49711 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.37□□□□□ -1.71
CTCFP49711 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC4.37□□□□□ -1.71
CTCFP49711 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC4.37□□□□□ -1.71
CTCFP49711 RPL23AP33-201ENST00000442301 452 ntBASIC4.37□□□□□ -1.71
CTCFP49711 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.37□□□□□ -1.71
CTCFP49711 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC4.37□□□□□ -1.71
CTCFP49711 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC4.37□□□□□ -1.71
CTCFP49711 RBMY2UP-201ENST00000453474 324 ntBASIC4.37□□□□□ -1.71
CTCFP49711 MTCO3P2-201ENST00000457365 171 ntBASIC4.37□□□□□ -1.71
CTCFP49711 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 132.8 ms