Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC116533.1-201ENST00000459748 321 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 RPS26P28-201ENST00000470806 348 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC146944.2-203ENST00000502493 354 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC020593.1-201ENST00000507399 299 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC109464.2-201ENST00000510242 943 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC139495.1-202ENST00000513164 354 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC008694.2-201ENST00000517591 306 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 DUXAP2-201ENST00000519198 589 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS4AQ9UN37 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC013828.2-201ENST00000532487 235 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 OR6C73P-201ENST00000546432 358 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS4AQ9UN37 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC091805.2-201ENST00000603848 235 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC107304.1-201ENST00000604229 296 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC010201.1-201ENST00000605051 540 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC020634.1-201ENST00000608701 549 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC138749.5-201ENST00000611461 208 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AL589743.7-201ENST00000612637 233 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC116165.2-201ENST00000616705 206 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AL138721.1-201ENST00000616756 179 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AC138932.5-201ENST00000617759 563 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
VPS4AQ9UN37 AP000843.1-201ENST00000624880 701 ntBASIC4.27□□□□□ -1.73
VPS4AQ9UN37 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS4AQ9UN37 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
VPS4AQ9UN37 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 RNU6-289P-201ENST00000364093 107 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 MIR93-201ENST00000385024 80 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 MIR320C1-201ENST00000408566 88 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 ELOCP17-201ENST00000414751 326 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 RPL36AP36-201ENST00000418616 301 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 Z97055.1-201ENST00000419730 712 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AL356387.2-201ENST00000422272 243 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AL356583.2-201ENST00000426536 280 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 DNAJC19P4-201ENST00000440115 345 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 PGBD4P3-201ENST00000440731 581 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AL353748.1-201ENST00000440753 474 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 OR6K1P-201ENST00000456766 971 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 OR9M1P-201ENST00000459641 921 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC087385.1-201ENST00000475062 312 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 LARP1BP2-201ENST00000486594 519 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC091167.1-201ENST00000492017 396 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 SAP18P1-201ENST00000512058 390 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 PAICSP4-201ENST00000517543 1253 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC022861.1-201ENST00000522981 663 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 MAL2-203ENST00000534619 578 ntTSL 4 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC092470.1-201ENST00000546187 132 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 MTND6P33-201ENST00000571794 183 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AL353997.4-201ENST00000586196 166 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 BNIP3P23-201ENST00000599655 511 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AL159169.3-201ENST00000608871 561 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC009318.4-201ENST00000620496 486 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC095031.1-201ENST00000623685 672 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AC005832.2-201ENST00000538921 1430 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 LINC00622-201ENST00000562811 1570 ntBASIC4.26□□□□□ -1.73
VPS4AQ9UN37 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
VPS4AQ9UN37 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 OR11H5P-202ENST00000641612 1325 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC092447.7-201ENST00000422212 1621 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 AC097714.1-201ENST00000511272 1647 ntBASIC4.25□□□□□ -1.73
VPS4AQ9UN37 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
VPS4AQ9UN37 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms