Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
VPS28Q9UK41 GNGT1-201ENST00000248572 720 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VPS28Q9UK41 RNU4-28P-201ENST00000364739 141 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 AL138878.1-201ENST00000405131 347 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 AL356131.1-201ENST00000405826 414 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 RNU6-757P-201ENST00000410334 100 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 RPS24P7-201ENST00000416921 246 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC4□□□□□ -1.77
VPS28Q9UK41 MTCO2P17-201ENST00000424336 677 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 HMGB3P5-201ENST00000428894 612 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4□□□□□ -1.77
VPS28Q9UK41 AC083863.1-201ENST00000438811 231 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 AC122718.1-201ENST00000439448 744 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4□□□□□ -1.77
VPS28Q9UK41 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC4□□□□□ -1.77
VPS28Q9UK41 RN7SL93P-201ENST00000463035 293 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 FAM133DP-201ENST00000464802 691 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC4□□□□□ -1.77
VPS28Q9UK41 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4□□□□□ -1.77
VPS28Q9UK41 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4□□□□□ -1.77
VPS28Q9UK41 AC087369.1-201ENST00000520775 996 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 IGKV2D-19-201ENST00000523346 262 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS28Q9UK41 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS28Q9UK41 CYCSP30-201ENST00000546447 172 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4□□□□□ -1.77
VPS28Q9UK41 AC234772.3-201ENST00000602277 528 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 AL031176.1-201ENST00000604554 466 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 AC112220.3-201ENST00000605502 502 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 AL451086.1-201ENST00000605596 223 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC4□□□□□ -1.77
VPS28Q9UK41 AC012531.5-201ENST00000611375 151 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 AC015967.1-201ENST00000619893 476 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
VPS28Q9UK41 AC244205.2-202ENST00000635781 342 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 AL022578.1-201ENST00000439330 1433 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4□□□□□ -1.77
VPS28Q9UK41 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS28Q9UK41 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4□□□□□ -1.77
VPS28Q9UK41 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS28Q9UK41 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VPS28Q9UK41 AL645937.1-201ENST00000641739 1652 ntBASIC4□□□□□ -1.77
VPS28Q9UK41 MAPK10-372ENST00000641954 3413 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS28Q9UK41 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS28Q9UK41 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS28Q9UK41 IPO8P1-201ENST00000455509 3109 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 RNU6-1155P-201ENST00000363554 107 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 RNU6-157P-201ENST00000383957 107 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 HMGN2P8-201ENST00000391458 268 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 RN7SKP202-201ENST00000410439 330 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 AL008987.1-201ENST00000415528 237 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS28Q9UK41 RPL36AP36-201ENST00000418616 301 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 PTP4A1P5-201ENST00000420305 455 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 DUTP6-201ENST00000425573 462 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 AC096638.2-201ENST00000434965 711 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 MTCYBP31-201ENST00000438855 1122 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 RPL7P52-201ENST00000449200 742 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 ANKRD26P4-201ENST00000455755 950 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 SNRPGP3-201ENST00000469405 227 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 MLLT10P2-201ENST00000506434 249 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 NDUFB4P9-201ENST00000511646 388 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 MTCO2P32-201ENST00000514865 403 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 NARSP2-201ENST00000518524 679 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 AC105185.1-201ENST00000518705 535 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 AC008802.1-201ENST00000519121 791 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS28Q9UK41 CR383656.7-201ENST00000548164 174 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 DUXAP1-201ENST00000556632 463 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 AC090615.1-201ENST00000577519 154 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 BBIP1P1-201ENST00000602999 279 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 AC025588.2-201ENST00000604851 466 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 AC004853.1-201ENST00000604902 698 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 FP236240.3-201ENST00000623061 327 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.99□□□□□ -1.77
VPS28Q9UK41 EXOC5P1-201ENST00000510543 1969 ntBASIC3.99□□□□□ -1.77
VPS28Q9UK41 NCAPGP1-201ENST00000505112 1814 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms