Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
ZNF541Q9H0D2 AC018529.3-201ENST00000624212 2254 ntBASIC4.09□□□□□ -1.76
ZNF541Q9H0D2 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
ZNF541Q9H0D2 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
ZNF541Q9H0D2 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
ZNF541Q9H0D2 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC012020.1-201ENST00000624541 1728 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 SRP72P2-201ENST00000344851 1979 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 RNU4-92P-201ENST00000363783 136 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 ATP5HP2-201ENST00000433885 485 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC084290.1-201ENST00000434995 374 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 RPS29P31-201ENST00000446147 164 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 RNF148-202ENST00000447240 839 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 SNORD11.1-201ENST00000459482 85 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC011979.1-201ENST00000472300 483 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AP000893.1-201ENST00000474462 794 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC069499.1-201ENST00000489433 509 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC018797.3-201ENST00000513388 1241 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 ARL2BPP5-201ENST00000523141 481 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AP001372.4-201ENST00000524889 472 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 OR4R3P-201ENST00000525084 838 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC234772.3-201ENST00000602277 528 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 YWHAQP7-201ENST00000603536 658 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC113368.1-201ENST00000603736 382 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC013412.1-201ENST00000610687 192 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 MTND5P31-201ENST00000419366 1374 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 ELL2P4-201ENST00000446870 1376 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 MFSD8-233ENST00000641482 4860 ntBASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.08□□□□□ -1.76
ZNF541Q9H0D2 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 AL133412.1-201ENST00000380194 2992 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 MIR649-201ENST00000384843 97 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 RNU6-1242P-201ENST00000391052 103 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 AL590084.1-201ENST00000407885 387 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 MTND4P22-201ENST00000413116 1169 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 AL161449.1-201ENST00000414531 1199 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 AC005345.1-201ENST00000431868 217 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 BX276092.4-201ENST00000452056 248 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 USP9YP25-201ENST00000457708 443 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 AC010486.1-201ENST00000511793 424 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 SNORA48.10-201ENST00000516965 160 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 AC090281.1-201ENST00000523019 276 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 MTND4P33-201ENST00000556706 766 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 SNORD39.3-201ENST00000584451 71 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 AC007566.2-201ENST00000603642 413 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 IGHV3-29-201ENST00000604817 344 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 AC008993.2-201ENST00000631744 806 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 TNPO1P3-201ENST00000436471 2662 ntBASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF541Q9H0D2 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.06□□□□□ -1.76
ZNF541Q9H0D2 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
ZNF541Q9H0D2 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
ZNF541Q9H0D2 MAPK6PS3-201ENST00000403865 2162 ntBASIC4.06□□□□□ -1.76
ZNF541Q9H0D2 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
ZNF541Q9H0D2 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
ZNF541Q9H0D2 RNU1-18P-201ENST00000363062 164 ntBASIC4.06□□□□□ -1.76
ZNF541Q9H0D2 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.06□□□□□ -1.76
ZNF541Q9H0D2 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms