Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 CST9LP2-201ENST00000437612 320 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC241584.1-201ENST00000438469 1241 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 SSXP4-201ENST00000451349 245 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC104629.1-201ENST00000494226 508 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC108078.3-201ENST00000502633 489 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 DYNLL1P6-201ENST00000503440 264 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC104417.1-201ENST00000523974 751 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AP001317.1-201ENST00000531194 960 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC126365.2-201ENST00000580630 379 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC124016.2-201ENST00000610058 665 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AL512427.1-201ENST00000618593 349 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC009318.4-201ENST00000620496 486 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC007275.1-201ENST00000621243 671 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 MTND2P41-201ENST00000637599 773 ntBASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC40Q4G0X9 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 RNU6-236P-201ENST00000363886 106 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 SNORA48.8-201ENST00000391324 134 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 RNA5SP44-201ENST00000410446 133 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 RAD23BP2-201ENST00000416003 1207 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AC092634.6-201ENST00000418558 192 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 KRR1P1-201ENST00000419430 803 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 OFD1P12Y-201ENST00000427963 1207 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 OFD1P13Y-201ENST00000431179 1232 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AC091286.1-201ENST00000431233 461 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 GOT2P5-201ENST00000433995 546 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 CDC27P1-201ENST00000445384 715 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 VPS26AP1-201ENST00000483197 979 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 SNORA64.4-201ENST00000516632 81 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 SULT1C2P1-202ENST00000562418 459 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AL162713.1-201ENST00000604480 262 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AP002802.2-201ENST00000605877 235 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AL583856.2-201ENST00000606298 543 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 uc_338.1-201ENST00000612113 180 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AC026634.1-201ENST00000634369 198 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AC118273.1-201ENST00000525324 3006 ntBASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.63□□□□□ -1.83
CCDC40Q4G0X9 AL356274.2-201ENST00000624379 3752 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 AL136164.4-201ENST00000625013 2135 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 HMGB1P5-201ENST00000255320 642 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 RNU1-70P-201ENST00000362618 164 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 RNA5SP383-201ENST00000362934 120 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 SNORD82-201ENST00000365530 70 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 BX323014.1-201ENST00000412876 237 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 HSFY4P-201ENST00000415994 1181 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 HMGN2P31-201ENST00000432430 273 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 ISCA1P2-201ENST00000438679 421 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 AC004062.1-201ENST00000509926 645 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 AC008837.1-201ENST00000511513 412 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 RNU1-61P-201ENST00000516107 151 ntBASIC3.62□□□□□ -1.83
CCDC40Q4G0X9 RNA5SP468-201ENST00000516782 93 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms