Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 SNORA25.6-201ENST00000364121 118 ntBASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 RNU6-167P-201ENST00000384292 106 ntBASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 AC098592.2-201ENST00000413158 265 ntBASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 MORF4L1P6-201ENST00000418771 268 ntBASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 USP9YP7-201ENST00000436723 430 ntBASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 RPS12P2-201ENST00000439728 269 ntBASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 AL353093.1-201ENST00000441292 436 ntBASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 USP9YP32-201ENST00000452432 430 ntBASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 CEACAMP4-201ENST00000457676 421 ntBASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 MTCO3P13-201ENST00000577757 781 ntBASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 AC103710.3-201ENST00000608157 948 ntBASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 AL592494.3-201ENST00000609485 464 ntBASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 CRYM-AS1-204ENST00000637983 556 ntBASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
CCDC88AQ3V6T2 RNU6-1331P-201ENST00000363658 106 ntBASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 USP9YP20-201ENST00000419224 558 ntBASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 AC022022.1-201ENST00000430304 178 ntBASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 RN7SKP210-201ENST00000459176 261 ntBASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 AC025260.1-201ENST00000548858 430 ntBASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 MIR5092-201ENST00000583139 88 ntBASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 AC123786.2-201ENST00000603459 275 ntBASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 AC107871.2-201ENST00000612894 502 ntBASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 GTF2H2B-203ENST00000508065 1432 ntBASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 RNU6-697P-201ENST00000363348 107 ntBASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 EIF5P1-201ENST00000400019 1231 ntBASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.05□□□□□ -1.92
CCDC88AQ3V6T2 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 RPL9P7-201ENST00000330965 580 ntBASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 RNA5SP210-201ENST00000391034 120 ntBASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 GSTA9P-201ENST00000406231 611 ntBASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 RNA5SP129-201ENST00000410276 118 ntBASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 CACYBPP1-201ENST00000438592 684 ntBASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 CKS1BP2-201ENST00000497342 240 ntBASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 IGHVIII-38-1-201ENST00000521454 282 ntBASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 AP000857.1-201ENST00000532151 543 ntBASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 OR11H5P-201ENST00000554039 926 ntBASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 FAM106CP-201ENST00000582212 507 ntBASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 AC010928.3-201ENST00000587712 541 ntBASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 MIR6873-201ENST00000622788 63 ntBASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 AC092881.1-201ENST00000638218 2733 ntBASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC88AQ3V6T2 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 AL079342.1-201ENST00000401460 267 ntBASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 RPS20P25-201ENST00000412447 352 ntBASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 AC096638.1-201ENST00000444678 216 ntBASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 AC025181.1-201ENST00000477507 416 ntBASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 AC006445.2-201ENST00000510061 472 ntBASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 AC107294.3-201ENST00000609211 526 ntBASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 AC004943.3-201ENST00000624116 600 ntBASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 AC009487.2-201ENST00000420969 6821 ntBASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.03□□□□□ -1.92
CCDC88AQ3V6T2 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.03□□□□□ -1.93
CCDC88AQ3V6T2 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC3.03□□□□□ -1.93
CCDC88AQ3V6T2 MRPL50P4-201ENST00000446432 475 ntBASIC3.03□□□□□ -1.93
CCDC88AQ3V6T2 VN1R48P-201ENST00000448149 1036 ntBASIC3.03□□□□□ -1.93
CCDC88AQ3V6T2 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.03□□□□□ -1.93
CCDC88AQ3V6T2 MIR4512-201ENST00000583257 77 ntBASIC3.03□□□□□ -1.93
CCDC88AQ3V6T2 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.03□□□□□ -1.93
CCDC88AQ3V6T2 AC007423.1-201ENST00000605009 627 ntBASIC3.03□□□□□ -1.93
CCDC88AQ3V6T2 AC007620.3-201ENST00000608131 497 ntBASIC3.03□□□□□ -1.93
CCDC88AQ3V6T2 AC103710.2-201ENST00000609912 942 ntBASIC3.03□□□□□ -1.93
CCDC88AQ3V6T2 AC116447.1-201ENST00000613153 453 ntBASIC3.03□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms