Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC125238.1-201ENST00000448842 249 ntBASIC2.33□□□□□ -2.04
CHD9Q3L8U1 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 CCNHP1-201ENST00000513311 678 ntBASIC2.33□□□□□ -2.04
CHD9Q3L8U1 RNA5SP200-201ENST00000516360 103 ntBASIC2.33□□□□□ -2.04
CHD9Q3L8U1 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 MFSD8-245ENST00000641743 948 ntBASIC2.33□□□□□ -2.04
CHD9Q3L8U1 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 AC008432.1-201ENST00000615912 1320 ntBASIC2.33□□□□□ -2.04
CHD9Q3L8U1 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC2.32□□□□□ -2.04
CHD9Q3L8U1 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.32□□□□□ -2.04
CHD9Q3L8U1 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
CHD9Q3L8U1 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
CHD9Q3L8U1 ELOCP13-201ENST00000443934 329 ntBASIC2.32□□□□□ -2.04
CHD9Q3L8U1 AC021146.5-201ENST00000503544 545 ntBASIC2.32□□□□□ -2.04
CHD9Q3L8U1 AL356266.1-201ENST00000623311 483 ntBASIC2.32□□□□□ -2.04
CHD9Q3L8U1 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CHD9Q3L8U1 RNU6-457P-201ENST00000363999 107 ntBASIC2.32□□□□□ -2.04
CHD9Q3L8U1 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
CHD9Q3L8U1 ATG3P1-201ENST00000419507 911 ntBASIC2.32□□□□□ -2.04
CHD9Q3L8U1 RPL7P54-201ENST00000438336 674 ntBASIC2.32□□□□□ -2.04
CHD9Q3L8U1 RPS29P11-201ENST00000496507 171 ntBASIC2.32□□□□□ -2.04
CHD9Q3L8U1 SCARNA16.3-201ENST00000516595 184 ntBASIC2.32□□□□□ -2.04
CHD9Q3L8U1 AC105137.2-201ENST00000569073 466 ntBASIC2.32□□□□□ -2.04
CHD9Q3L8U1 AC006272.2-201ENST00000594725 163 ntBASIC2.32□□□□□ -2.04
CHD9Q3L8U1 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.32□□□□□ -2.04
CHD9Q3L8U1 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
CHD9Q3L8U1 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
CHD9Q3L8U1 ADAM3A-203ENST00000461344 2157 ntBASIC2.32□□□□□ -2.04
CHD9Q3L8U1 SNORA25.6-201ENST00000364121 118 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 SNORA25.9-201ENST00000365087 128 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 GCNT6-201ENST00000379591 934 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 AC087385.1-201ENST00000475062 312 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 AC012182.1-201ENST00000570133 895 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 LINC00901.1-201ENST00000617252 152 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 Z99496.1-201ENST00000469424 1477 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 AMZ2P1-203ENST00000565833 850 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 MIR21-201ENST00000362134 72 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 Y_RNA.116-201ENST00000363292 103 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 MIR583-201ENST00000384846 75 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 AP1B1P2-201ENST00000416196 106 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 BTF3P4-201ENST00000418852 495 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC2.31□□□□□ -2.04
CHD9Q3L8U1 AC022882.1-201ENST00000532142 501 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 AC008083.2-201ENST00000546707 476 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 AL451074.6-201ENST00000608512 729 ntBASIC2.31□□□□□ -2.04
CHD9Q3L8U1 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.3□□□□□ -2.04
CHD9Q3L8U1 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.3□□□□□ -2.04
CHD9Q3L8U1 LAP3P1-201ENST00000403648 294 ntBASIC2.3□□□□□ -2.04
CHD9Q3L8U1 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.3□□□□□ -2.04
CHD9Q3L8U1 FABP5P13-201ENST00000452144 328 ntBASIC2.3□□□□□ -2.04
CHD9Q3L8U1 AC108078.2-201ENST00000510750 236 ntBASIC2.3□□□□□ -2.04
CHD9Q3L8U1 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.3□□□□□ -2.04
CHD9Q3L8U1 ISCA1P3-201ENST00000577104 373 ntBASIC2.3□□□□□ -2.04
CHD9Q3L8U1 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC2.3□□□□□ -2.04
CHD9Q3L8U1 AC009831.4-201ENST00000620744 325 ntBASIC2.3□□□□□ -2.04
CHD9Q3L8U1 AC093591.3-201ENST00000634516 308 ntBASIC2.3□□□□□ -2.04
CHD9Q3L8U1 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CHD9Q3L8U1 HSP90AA5P-201ENST00000438353 2192 ntBASIC2.3□□□□□ -2.04
CHD9Q3L8U1 RPL38P4-201ENST00000502376 214 ntBASIC2.3□□□□□ -2.04
CHD9Q3L8U1 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.3□□□□□ -2.04
CHD9Q3L8U1 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.3□□□□□ -2.04
CHD9Q3L8U1 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.3□□□□□ -2.04
CHD9Q3L8U1 MIR219B-201ENST00000637023 88 ntBASIC2.3□□□□□ -2.04
CHD9Q3L8U1 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.3□□□□□ -2.04
CHD9Q3L8U1 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.29□□□□□ -2.04
CHD9Q3L8U1 SCN1A-220ENST00000641603 12506 ntBASIC2.29□□□□□ -2.04
CHD9Q3L8U1 LUZP4P1-201ENST00000415420 344 ntBASIC2.29□□□□□ -2.04
CHD9Q3L8U1 RN7SL297P-201ENST00000483161 293 ntBASIC2.29□□□□□ -2.04
CHD9Q3L8U1 RAD51AP1P1-201ENST00000484195 1001 ntBASIC2.29□□□□□ -2.04
CHD9Q3L8U1 AC092045.1-201ENST00000495716 1231 ntBASIC2.29□□□□□ -2.04
CHD9Q3L8U1 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
CHD9Q3L8U1 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.29□□□□□ -2.04
CHD9Q3L8U1 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
CHD9Q3L8U1 FRG1BP-201ENST00000278882 761 ntBASIC2.29□□□□□ -2.04
CHD9Q3L8U1 MTATP6P11-201ENST00000428071 670 ntBASIC2.29□□□□□ -2.04
CHD9Q3L8U1 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC2.29□□□□□ -2.04
CHD9Q3L8U1 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.29□□□□□ -2.04
CHD9Q3L8U1 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC2.29□□□□□ -2.04
CHD9Q3L8U1 AL158196.1-201ENST00000616786 434 ntBASIC2.29□□□□□ -2.04
CHD9Q3L8U1 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms