Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 Z82190.1-201ENST00000454534 490 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 RNU7-136P-201ENST00000458819 69 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 snoU13.4-201ENST00000458916 104 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 OR9M1P-201ENST00000459641 921 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 RPS3AP6-201ENST00000484430 795 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 AC023424.2-201ENST00000493479 777 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 AC004062.1-201ENST00000509926 645 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS28Q9UK41 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 CYCSP2-201ENST00000558168 301 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 AC061975.8-201ENST00000587058 721 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 AP000484.1-201ENST00000620067 1252 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
VPS28Q9UK41 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
VPS28Q9UK41 ZNF876P-202ENST00000398732 1485 ntBASIC4.04□□□□□ -1.76
VPS28Q9UK41 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
VPS28Q9UK41 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS28Q9UK41 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS28Q9UK41 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS28Q9UK41 FAM133CP-201ENST00000332869 704 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 RNA5SP97-201ENST00000365006 84 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 SNORD3H-201ENST00000384486 214 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC025750.1-201ENST00000399891 379 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 CYCSP45-201ENST00000402289 315 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 USP9YP33-201ENST00000412220 421 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 TPMTP2-201ENST00000414372 726 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 MTCYBP38-201ENST00000417160 1123 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 OR1AA1P-201ENST00000419597 916 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC006960.1-201ENST00000419980 153 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AL953862.1-201ENST00000423016 168 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 USP9YP35-201ENST00000435696 412 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 CYCSP43-201ENST00000438233 310 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 RPL21P11-201ENST00000461458 483 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 RPS4XP13-201ENST00000483219 789 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 FAM172BP-201ENST00000487497 1089 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 NAA50-206ENST00000493454 964 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 BTF3L4P4-201ENST00000506381 449 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 NPM1P41-201ENST00000512920 831 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 RNU6-1095P-201ENST00000516148 108 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 RN7SKP265-201ENST00000516448 223 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 RNA5SP143-201ENST00000516936 115 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC091515.1-201ENST00000548110 679 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 GNRHR2P1-201ENST00000555315 631 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC087465.1-201ENST00000560574 245 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 ZNF192P1-203ENST00000565888 810 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC093227.2-201ENST00000589357 285 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 VN1R82P-201ENST00000601481 356 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC015726.1-201ENST00000602353 681 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AL391001.1-201ENST00000602747 715 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AL592221.1-201ENST00000605266 382 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AL158042.1-201ENST00000605338 460 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AL109618.2-201ENST00000605527 211 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 AC092106.3-201ENST00000611308 722 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 AL356585.4-201ENST00000623078 1229 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 RBM12B-AS1-201ENST00000623283 653 ntBASIC4.03□□□□□ -1.76
VPS28Q9UK41 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.03□□□□□ -1.76
VPS28Q9UK41 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS28Q9UK41 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS28Q9UK41 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms