Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.4□□□□□ -2.03
SCN3AQ9NY46 AC005951.1-201ENST00000576706 485 ntBASIC2.4□□□□□ -2.03
SCN3AQ9NY46 NF1P5-201ENST00000588287 448 ntBASIC2.4□□□□□ -2.03
SCN3AQ9NY46 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
SCN3AQ9NY46 AC002076.2-201ENST00000617362 122 ntBASIC2.4□□□□□ -2.03
SCN3AQ9NY46 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
SCN3AQ9NY46 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
SCN3AQ9NY46 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 AL590004.2-201ENST00000404787 371 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 RPS20P25-201ENST00000412447 352 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 MUPP-201ENST00000438111 566 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 SLC31A1P1-201ENST00000451221 567 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 MIR5092-201ENST00000583139 88 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 AC022079.2-201ENST00000619739 566 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 PTP4A1P3-201ENST00000433661 420 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 OR7L1P-201ENST00000456181 380 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 AC012181.1-201ENST00000479895 423 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 RPL5P23-201ENST00000496040 868 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 SNORA31.15-201ENST00000516771 132 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.39□□□□□ -2.03
SCN3AQ9NY46 AP001207.1-201ENST00000524051 481 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 UBTFL10-201ENST00000528532 562 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 AL157394.1-201ENST00000562983 1224 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 AC010653.1-201ENST00000571108 881 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 AC061975.8-201ENST00000587058 721 ntBASIC2.39□□□□□ -2.03
SCN3AQ9NY46 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 AC138915.3-201ENST00000562908 1389 ntBASIC2.38□□□□□ -2.03
SCN3AQ9NY46 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 SNORA67.4-201ENST00000384688 142 ntBASIC2.38□□□□□ -2.03
SCN3AQ9NY46 BTF3P9-201ENST00000418784 283 ntBASIC2.38□□□□□ -2.03
SCN3AQ9NY46 RPL30P3-201ENST00000424262 333 ntBASIC2.38□□□□□ -2.03
SCN3AQ9NY46 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 THAP6-203ENST00000502620 582 ntTSL 3 BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 AP001960.1-201ENST00000506494 658 ntBASIC2.38□□□□□ -2.03
SCN3AQ9NY46 AC114781.4-201ENST00000513707 639 ntBASIC2.38□□□□□ -2.03
SCN3AQ9NY46 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 SNORA50A-202ENST00000629536 136 ntBASIC2.38□□□□□ -2.03
SCN3AQ9NY46 AC243829.7-201ENST00000633081 225 ntBASIC2.38□□□□□ -2.03
SCN3AQ9NY46 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 AP000526.1-201ENST00000603308 1388 ntBASIC2.38□□□□□ -2.03
SCN3AQ9NY46 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
SCN3AQ9NY46 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.37□□□□□ -2.03
SCN3AQ9NY46 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.37□□□□□ -2.03
SCN3AQ9NY46 DYNLT3P1-201ENST00000378574 347 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
SCN3AQ9NY46 RNU2-37P-201ENST00000410695 177 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 NANOGP5-201ENST00000424456 877 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC2.37□□□□□ -2.03
SCN3AQ9NY46 AL031736.2-201ENST00000426573 787 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 TRIAP1P1-201ENST00000427062 225 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 AC073069.1-201ENST00000428657 441 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC2.37□□□□□ -2.03
SCN3AQ9NY46 CBX1P4-201ENST00000439415 457 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC2.37□□□□□ -2.03
SCN3AQ9NY46 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC2.37□□□□□ -2.03
SCN3AQ9NY46 RN7SL499P-201ENST00000481141 276 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 RN7SL636P-201ENST00000497504 294 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 AP002812.4-201ENST00000532139 286 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 AP004242.1-201ENST00000533701 349 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 AC128657.1-201ENST00000549459 145 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 MIR548Y-201ENST00000582739 110 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC2.37□□□□□ -2.03
SCN3AQ9NY46 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC2.37□□□□□ -2.03
SCN3AQ9NY46 CRYM-AS1-204ENST00000637983 556 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
SCN3AQ9NY46 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.37□□□□□ -2.03
SCN3AQ9NY46 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.37□□□□□ -2.03
SCN3AQ9NY46 RNU1-100P-201ENST00000365255 165 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.37□□□□□ -2.03
SCN3AQ9NY46 RNU6-301P-201ENST00000384277 107 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 UQCRFS1P3-201ENST00000407697 385 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 ZDHHC20P2-201ENST00000424108 429 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 RPS24P8-201ENST00000431490 402 ntBASIC2.37□□□□□ -2.03
SCN3AQ9NY46 RPS12P2-201ENST00000439728 269 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms