Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
LINC00643Q86TS7 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.51□□□□□ -2.17
LINC00643Q86TS7 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
LINC00643Q86TS7 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AC011460.1-201ENST00000636268 1834 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 SNORD3H-201ENST00000384486 214 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AL022722.2-201ENST00000402519 180 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AL030996.1-201ENST00000411430 235 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 RPS20P5-201ENST00000434808 360 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 RPL31P20-201ENST00000449593 360 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 RNU7-26P-201ENST00000458980 63 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AC010285.1-201ENST00000470580 392 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AC109486.1-201ENST00000486833 374 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AC083923.1-201ENST00000523708 376 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 HSPE1P3-201ENST00000559254 309 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AC007225.2-201ENST00000562529 256 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AL136363.1-201ENST00000605349 337 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AL391834.1-201ENST00000609609 560 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 HMGB1P24-202ENST00000615653 685 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 DUXAP9-208ENST00000622815 614 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 AC006963.1-201ENST00000624003 1052 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 MIR492-201ENST00000638676 116 ntBASIC1.5□□□□□ -2.17
LINC00643Q86TS7 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC1.5□□□□□ -2.17
LINC00643Q86TS7 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 OR5BR1P-201ENST00000524992 1330 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 RNA5SP68-201ENST00000363885 119 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 RNA5SP456-201ENST00000364002 114 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 FIG4-202ENST00000368941 791 ntTSL 3 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 ESD-201ENST00000378697 1079 ntTSL 5 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC073063.1-201ENST00000434352 607 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC092641.1-201ENST00000440229 772 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 RPS7P7-201ENST00000463499 571 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC025033.1-201ENST00000463883 194 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 RN7SL274P-201ENST00000492268 272 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC093763.2-201ENST00000505334 1223 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 RNU1-95P-201ENST00000516357 160 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 RNU1-128P-201ENST00000516704 160 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC234917.1-201ENST00000534006 316 ntTSL 3 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AGGF1P5-201ENST00000567900 919 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC012493.3-201ENST00000604494 112 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 ZNF33BP1-201ENST00000452497 1834 ntBASIC1.49□□□□□ -2.17
LINC00643Q86TS7 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
LINC00643Q86TS7 TAB3P1-202ENST00000452645 1634 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 WFDC10B-202ENST00000335769 475 ntAPPRIS P4 TSL 1 (best) BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 RN7SKP187-201ENST00000365536 330 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 RNA5SP338-201ENST00000410495 85 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 HNRNPDLP1-201ENST00000412834 550 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 BX323014.1-201ENST00000412876 237 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AL158825.1-201ENST00000414735 521 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 OR51AB1P-201ENST00000429046 620 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC1.48□□□□□ -2.17
LINC00643Q86TS7 AC112653.1-201ENST00000443851 386 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 PSPHP1-201ENST00000450062 261 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 RPL37P3-201ENST00000456825 293 ntBASIC1.48□□□□□ -2.17
LINC00643Q86TS7 RNA5SP310-201ENST00000459084 116 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms