Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
USP39Q53GS9 AC116563.2-201ENST00000624751 535 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC4.82□□□□□ -1.64
USP39Q53GS9 MTND5P42-201ENST00000637720 498 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.82□□□□□ -1.64
USP39Q53GS9 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.82□□□□□ -1.64
USP39Q53GS9 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.82□□□□□ -1.64
USP39Q53GS9 OR56B2P-202ENST00000641377 2453 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
USP39Q53GS9 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
USP39Q53GS9 MAPK10-349ENST00000641767 3661 ntBASIC4.82□□□□□ -1.64
USP39Q53GS9 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.81□□□□□ -1.64
USP39Q53GS9 AC008758.3-201ENST00000507003 1829 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP39Q53GS9 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
USP39Q53GS9 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
USP39Q53GS9 U8.3-201ENST00000363321 132 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC4.81□□□□□ -1.64
USP39Q53GS9 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.81□□□□□ -1.64
USP39Q53GS9 RNU6-908P-201ENST00000410160 94 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC4.81□□□□□ -1.64
USP39Q53GS9 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.81□□□□□ -1.64
USP39Q53GS9 UQCRBP1-201ENST00000421129 336 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AL732292.1-201ENST00000426692 226 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AC073335.1-201ENST00000427776 363 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.81□□□□□ -1.64
USP39Q53GS9 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC4.81□□□□□ -1.64
USP39Q53GS9 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.81□□□□□ -1.64
USP39Q53GS9 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC4.81□□□□□ -1.64
USP39Q53GS9 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.81□□□□□ -1.64
USP39Q53GS9 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.81□□□□□ -1.64
USP39Q53GS9 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.81□□□□□ -1.64
USP39Q53GS9 SNRPGP6-201ENST00000451124 220 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC4.81□□□□□ -1.64
USP39Q53GS9 AC104687.1-201ENST00000485829 412 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
USP39Q53GS9 RNU6-327P-201ENST00000516270 127 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 RNU6-1045P-201ENST00000516321 107 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.81□□□□□ -1.64
USP39Q53GS9 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.81□□□□□ -1.64
USP39Q53GS9 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.81□□□□□ -1.64
USP39Q53GS9 AC007424.1-203ENST00000554613 687 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AL049839.1-201ENST00000556151 657 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.81□□□□□ -1.64
USP39Q53GS9 AL157394.1-201ENST00000562983 1224 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.81□□□□□ -1.64
USP39Q53GS9 SNORA74C-1-201ENST00000580726 201 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 MIR548Y-201ENST00000582739 110 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC4.81□□□□□ -1.64
USP39Q53GS9 PSMA6P4-201ENST00000603247 718 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AC112187.2-201ENST00000604345 283 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 MIR6716-201ENST00000613413 80 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AC234782.5-201ENST00000617723 324 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AC006504.8-201ENST00000621046 635 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AC091905.1-201ENST00000624400 311 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 AC068724.3-201ENST00000625906 87 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 BMS1P21-201ENST00000634565 365 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 OR52H1-202ENST00000641796 1061 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP39Q53GS9 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP39Q53GS9 AC006971.1-201ENST00000407916 4486 ntBASIC4.81□□□□□ -1.64
USP39Q53GS9 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.81□□□□□ -1.64
USP39Q53GS9 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
USP39Q53GS9 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.8□□□□□ -1.64
USP39Q53GS9 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.8□□□□□ -1.64
USP39Q53GS9 NEAT1-202ENST00000501122 22743 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USP39Q53GS9 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.8□□□□□ -1.64
USP39Q53GS9 AL442639.1-201ENST00000625030 1899 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
USP39Q53GS9 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
USP39Q53GS9 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
USP39Q53GS9 RNU6-845P-201ENST00000362578 103 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 RNA5SP479-201ENST00000364858 117 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 SNORD81.2-201ENST00000365153 76 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USP39Q53GS9 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
USP39Q53GS9 Y_RNA.419-201ENST00000384041 102 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 RNU6-533P-201ENST00000384144 107 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
USP39Q53GS9 MIR1303-201ENST00000408625 86 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 RN7SKP267-201ENST00000410381 285 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 RN7SKP27-201ENST00000410684 333 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 RNU6-195P-201ENST00000411352 109 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.8□□□□□ -1.64
USP39Q53GS9 AL358176.3-201ENST00000420757 454 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 SDCBPP2-201ENST00000424643 885 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 AC109583.1-201ENST00000432156 268 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 AC002486.1-201ENST00000435098 391 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC4.8□□□□□ -1.64
USP39Q53GS9 USP9YP15-201ENST00000442391 422 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 AC000111.2-201ENST00000448200 210 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 SLC31A1P1-201ENST00000451221 567 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 RPL26P28-201ENST00000451325 435 ntBASIC4.8□□□□□ -1.64
USP39Q53GS9 AC073486.1-201ENST00000453278 531 ntTSL 5 BASIC4.8□□□□□ -1.64
USP39Q53GS9 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.8□□□□□ -1.64
USP39Q53GS9 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.8□□□□□ -1.64
USP39Q53GS9 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
USP39Q53GS9 RNU6-1281P-201ENST00000516223 105 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 90.1 ms