Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MIR137-201ENST00000385223 102 ntBASIC2.36□□□□□ -2.03
CHD9Q3L8U1 SNORA11.4-201ENST00000408823 129 ntBASIC2.36□□□□□ -2.03
CHD9Q3L8U1 RNU6-321P-201ENST00000410912 106 ntBASIC2.36□□□□□ -2.03
CHD9Q3L8U1 RPS20P25-201ENST00000412447 352 ntBASIC2.36□□□□□ -2.03
CHD9Q3L8U1 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC2.36□□□□□ -2.03
CHD9Q3L8U1 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC2.36□□□□□ -2.03
CHD9Q3L8U1 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.36□□□□□ -2.03
CHD9Q3L8U1 MIR5007-201ENST00000583098 95 ntBASIC2.36□□□□□ -2.03
CHD9Q3L8U1 AC009570.1-201ENST00000609599 745 ntBASIC2.36□□□□□ -2.03
CHD9Q3L8U1 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.36□□□□□ -2.03
CHD9Q3L8U1 AL353746.1-201ENST00000566293 6881 ntBASIC2.36□□□□□ -2.03
CHD9Q3L8U1 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC2.36□□□□□ -2.03
CHD9Q3L8U1 AC092427.1-202ENST00000430569 476 ntBASIC2.36□□□□□ -2.03
CHD9Q3L8U1 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC2.36□□□□□ -2.03
CHD9Q3L8U1 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC2.36□□□□□ -2.03
CHD9Q3L8U1 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.36□□□□□ -2.03
CHD9Q3L8U1 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC2.36□□□□□ -2.03
CHD9Q3L8U1 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.36□□□□□ -2.03
CHD9Q3L8U1 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
CHD9Q3L8U1 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 OR4A45P-201ENST00000529954 901 ntBASIC2.35□□□□□ -2.03
CHD9Q3L8U1 NPM1P35-201ENST00000533043 868 ntBASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC020633.1-201ENST00000468439 2247 ntBASIC2.35□□□□□ -2.03
CHD9Q3L8U1 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC019072.1-201ENST00000604535 1551 ntBASIC2.35□□□□□ -2.03
CHD9Q3L8U1 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 RNU1-91P-201ENST00000364746 163 ntBASIC2.35□□□□□ -2.03
CHD9Q3L8U1 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AL591623.2-201ENST00000449978 222 ntBASIC2.35□□□□□ -2.03
CHD9Q3L8U1 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AL583832.1-201ENST00000603227 784 ntBASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AL513175.2-201ENST00000422071 443 ntBASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 RPL21P71-201ENST00000465598 459 ntBASIC2.35□□□□□ -2.03
CHD9Q3L8U1 LINC00888-204ENST00000487386 421 ntBASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC079089.1-202ENST00000528800 1256 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 OR7K1P-201ENST00000546439 926 ntBASIC2.35□□□□□ -2.03
CHD9Q3L8U1 SETP1-201ENST00000556014 845 ntBASIC2.35□□□□□ -2.03
CHD9Q3L8U1 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CHD9Q3L8U1 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CHD9Q3L8U1 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CHD9Q3L8U1 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AC004263.1-201ENST00000479327 332 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AC104090.1-201ENST00000506341 1171 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.34□□□□□ -2.03
CHD9Q3L8U1 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AL670379.6-201ENST00000603753 252 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AL670379.11-201ENST00000604059 253 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AL670379.10-201ENST00000604330 253 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AC008162.1-201ENST00000604718 254 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AL670379.1-201ENST00000604752 252 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AL670379.2-201ENST00000604983 252 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AL670379.5-201ENST00000605253 252 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AL670379.4-201ENST00000605279 254 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AL670379.12-201ENST00000605291 253 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AL670379.8-201ENST00000605353 252 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AL670379.9-201ENST00000605428 253 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AL670379.7-201ENST00000605823 252 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 AC103710.1-201ENST00000610003 901 ntBASIC2.34□□□□□ -2.03
CHD9Q3L8U1 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC2.34□□□□□ -2.03
CHD9Q3L8U1 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC2.34□□□□□ -2.04
CHD9Q3L8U1 TAF9P1-201ENST00000445421 515 ntBASIC2.34□□□□□ -2.04
CHD9Q3L8U1 TAF9P2-201ENST00000454958 515 ntBASIC2.34□□□□□ -2.04
CHD9Q3L8U1 TXNP6-201ENST00000510190 310 ntBASIC2.34□□□□□ -2.04
CHD9Q3L8U1 OR4U1P-201ENST00000554958 912 ntBASIC2.34□□□□□ -2.04
CHD9Q3L8U1 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.34□□□□□ -2.04
CHD9Q3L8U1 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
CHD9Q3L8U1 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.34□□□□□ -2.04
CHD9Q3L8U1 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.34□□□□□ -2.04
CHD9Q3L8U1 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 AL359715.4-201ENST00000606629 1436 ntBASIC2.33□□□□□ -2.04
CHD9Q3L8U1 UQCRFS1P3-201ENST00000407697 385 ntBASIC2.33□□□□□ -2.04
CHD9Q3L8U1 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 AL118520.1-201ENST00000450770 291 ntBASIC2.33□□□□□ -2.04
CHD9Q3L8U1 AC147055.1-201ENST00000509261 750 ntBASIC2.33□□□□□ -2.04
CHD9Q3L8U1 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.33□□□□□ -2.04
CHD9Q3L8U1 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC2.33□□□□□ -2.04
CHD9Q3L8U1 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms