Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC016542.2-201ENST00000624201 619 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 AC099654.11-201ENST00000638857 294 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 HDX-206ENST00000506585 6158 ntTSL 2 BASIC1.74□□□□□ -2.13
COL7A1Q02388 AC093010.3-201ENST00000570269 15214 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 LAP3P1-201ENST00000403648 294 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 RAC1P3-201ENST00000416129 580 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 Z82205.1-201ENST00000428456 297 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC1.74□□□□□ -2.13
COL7A1Q02388 AL355836.1-201ENST00000555951 870 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 AC005046.1-201ENST00000608515 625 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 AL591516.1-201ENST00000611326 274 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 AC010338.1-201ENST00000621823 717 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
COL7A1Q02388 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
COL7A1Q02388 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC1.74□□□□□ -2.13
COL7A1Q02388 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC1.74□□□□□ -2.13
COL7A1Q02388 AC004520.1-201ENST00000608362 1413 ntBASIC1.74□□□□□ -2.13
COL7A1Q02388 RNU6-805P-201ENST00000365643 106 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 RNU1-73P-201ENST00000383971 164 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 AL139156.1-201ENST00000412785 841 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 AL592437.1-201ENST00000443781 492 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 AC108078.2-201ENST00000510750 236 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 AP000790.1-201ENST00000528891 737 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 RANP3-201ENST00000530970 276 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC1.73□□□□□ -2.13
COL7A1Q02388 AC128687.1-201ENST00000605304 619 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 U7.8-201ENST00000619968 63 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC1.73□□□□□ -2.13
COL7A1Q02388 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
COL7A1Q02388 AP000526.1-201ENST00000603308 1388 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 RNU1-17P-201ENST00000363022 152 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 AL590084.1-201ENST00000407885 387 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC1.73□□□□□ -2.13
COL7A1Q02388 NPM1P49-201ENST00000448027 714 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 RN7SL283P-201ENST00000489055 303 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 RPL23AP49-201ENST00000492925 468 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC1.73□□□□□ -2.13
COL7A1Q02388 RGS4-209ENST00000531057 544 ntTSL 4 BASIC1.73□□□□□ -2.13
COL7A1Q02388 AC128657.1-201ENST00000549459 145 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 SUB1P3-201ENST00000564581 315 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 AL365503.1-201ENST00000605247 905 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 AC067747.1-201ENST00000608026 250 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 SPATA2P1-201ENST00000431223 2055 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
COL7A1Q02388 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
COL7A1Q02388 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
COL7A1Q02388 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
COL7A1Q02388 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
COL7A1Q02388 AC009487.2-201ENST00000420969 6821 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC1.73□□□□□ -2.13
COL7A1Q02388 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC1.73□□□□□ -2.13
COL7A1Q02388 Z73965.1-201ENST00000623412 2297 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
COL7A1Q02388 RNY1P10-201ENST00000363268 113 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 RNA5SP88-201ENST00000365560 109 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 MIR708-201ENST00000390708 88 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 AL591416.1-201ENST00000404015 867 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 GTF2IP23-201ENST00000423746 351 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 AC011753.1-201ENST00000451001 220 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC1.73□□□□□ -2.13
COL7A1Q02388 RN7SL633P-201ENST00000488974 297 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC1.73□□□□□ -2.13
COL7A1Q02388 RNA5SP281-201ENST00000516504 135 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 AC074029.1-201ENST00000552531 1044 ntBASIC1.73□□□□□ -2.13
COL7A1Q02388 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC1.73□□□□□ -2.13
COL7A1Q02388 AC097714.1-201ENST00000511272 1647 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC1.72□□□□□ -2.13
COL7A1Q02388 RN7SKP285-201ENST00000410137 318 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
COL7A1Q02388 DNAJC19P4-201ENST00000440115 345 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 RPS26P30-201ENST00000443431 335 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC1.72□□□□□ -2.13
COL7A1Q02388 RN7SKP96-201ENST00000516948 297 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
COL7A1Q02388 AC092851.1-201ENST00000535964 478 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 AC023813.4-201ENST00000607580 580 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 PSMD5-AS1-215ENST00000640622 205 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC1.72□□□□□ -2.13
COL7A1Q02388 AC011460.1-201ENST00000636268 1834 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
COL7A1Q02388 GSTA9P-201ENST00000406231 611 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 RNU6-321P-201ENST00000410912 106 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC1.72□□□□□ -2.13
COL7A1Q02388 AC108667.1-201ENST00000428618 249 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC1.72□□□□□ -2.13
COL7A1Q02388 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC1.72□□□□□ -2.13
COL7A1Q02388 AC133473.1-201ENST00000455173 299 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 AC105918.1-201ENST00000474399 838 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 FAM92A1P2-202ENST00000504766 877 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC1.72□□□□□ -2.13
COL7A1Q02388 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC1.72□□□□□ -2.13
COL7A1Q02388 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
COL7A1Q02388 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
COL7A1Q02388 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
COL7A1Q02388 AC093831.2-201ENST00000624393 3427 ntBASIC1.72□□□□□ -2.13
COL7A1Q02388 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.13
COL7A1Q02388 RNU1-75P-201ENST00000347264 129 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC1.71□□□□□ -2.14
COL7A1Q02388 MTCO3P21-201ENST00000430791 643 ntBASIC1.71□□□□□ -2.14
COL7A1Q02388 AC010881.1-201ENST00000433830 235 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms