Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AF228730.1-201ENST00000397972 663 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 ERMN-204ENST00000409925 556 ntTSL 4 BASIC4.37□□□□□ -1.71
HOXC9P31274 RPL22P18-201ENST00000417197 377 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 GTF2IP23-201ENST00000423746 351 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 PPIAP17-201ENST00000438507 471 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 AL831737.1-201ENST00000441288 271 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 RPL7P59-201ENST00000447700 943 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 AC004022.1-201ENST00000447766 1066 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 AC079776.3-201ENST00000450665 370 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXC9P31274 FCF1P3-201ENST00000496394 590 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXC9P31274 MTCYBP35-201ENST00000503630 1137 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 RNU6-202P-201ENST00000515998 96 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 RN7SKP289-201ENST00000517244 295 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXC9P31274 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXC9P31274 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXC9P31274 AADACP1-206ENST00000561502 1193 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 AC009097.3-201ENST00000563557 1018 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC4.37□□□□□ -1.71
HOXC9P31274 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.37□□□□□ -1.71
HOXC9P31274 AC006539.2-201ENST00000601729 572 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 AC069304.3-201ENST00000603938 1084 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 AL033523.1-201ENST00000605153 153 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 AC107952.2-201ENST00000606048 486 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 AC092106.3-201ENST00000611308 722 ntBASIC4.37□□□□□ -1.71
HOXC9P31274 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXC9P31274 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HOXC9P31274 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.37□□□□□ -1.71
HOXC9P31274 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
HOXC9P31274 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
HOXC9P31274 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC9P31274 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC9P31274 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
HOXC9P31274 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.36□□□□□ -1.71
HOXC9P31274 NEAT1-202ENST00000501122 22743 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HOXC9P31274 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HOXC9P31274 RNU6-619P-201ENST00000365146 108 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC9P31274 RNU1-89P-201ENST00000384592 164 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 RPL31P52-201ENST00000407532 367 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 RNA5SP229-201ENST00000410809 99 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 AC005005.2-201ENST00000420779 380 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXC9P31274 AL031736.2-201ENST00000426573 787 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXC9P31274 AL158071.1-201ENST00000430315 461 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 RAB11AP1-201ENST00000442978 646 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 COX6CP18-201ENST00000448769 222 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 IFNWP4-201ENST00000453148 294 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXC9P31274 AC048346.1-201ENST00000510247 144 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXC9P31274 AF186190.1-201ENST00000517470 480 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 HIGD1AP6-201ENST00000521833 279 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXC9P31274 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXC9P31274 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXC9P31274 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.36□□□□□ -1.71
HOXC9P31274 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC4.36□□□□□ -1.71
HOXC9P31274 AC061975.8-201ENST00000587058 721 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 AC008687.2-201ENST00000597865 520 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 AC105227.2-201ENST00000615075 605 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC4.36□□□□□ -1.71
HOXC9P31274 AC009318.3-201ENST00000616916 503 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXC9P31274 AC018692.3-201ENST00000623929 123 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 AC006386.2-201ENST00000624491 75 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 AC012005.1-201ENST00000624575 75 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 AP003072.4-201ENST00000624580 310 ntBASIC4.36□□□□□ -1.71
HOXC9P31274 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HOXC9P31274 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.36□□□□□ -1.71
HOXC9P31274 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HOXC9P31274 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
HOXC9P31274 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXC9P31274 OR10J6P-201ENST00000289731 930 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
HOXC9P31274 SNORA80A-201ENST00000363922 136 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 SNORA44-201ENST00000384584 132 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 ERHP2-201ENST00000402323 299 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AL590084.1-201ENST00000407885 387 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AC126124.2-201ENST00000413542 321 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 DPRXP1-201ENST00000426312 460 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXC9P31274 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXC9P31274 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXC9P31274 AC007327.1-201ENST00000447461 264 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 NANOGNBP1-201ENST00000448444 480 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC4.35□□□□□ -1.71
HOXC9P31274 MTCO3P20-201ENST00000454926 688 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXC9P31274 AC104689.1-201ENST00000473356 768 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXC9P31274 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC4.35□□□□□ -1.71
HOXC9P31274 FTH1P9-201ENST00000513251 355 ntBASIC4.35□□□□□ -1.71
HOXC9P31274 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.35□□□□□ -1.71
HOXC9P31274 AC090136.1-201ENST00000520009 240 ntBASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms