Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.16□□□□□ -1.58
HMGB1P09429 PGBD4P8-201ENST00000412993 562 ntBASIC5.16□□□□□ -1.58
HMGB1P09429 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC5.16□□□□□ -1.58
HMGB1P09429 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC5.16□□□□□ -1.58
HMGB1P09429 AL139095.3-201ENST00000419672 1203 ntBASIC5.16□□□□□ -1.58
HMGB1P09429 AC092573.2-201ENST00000434546 243 ntBASIC5.16□□□□□ -1.58
HMGB1P09429 TXNP1-201ENST00000441872 371 ntBASIC5.16□□□□□ -1.58
HMGB1P09429 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC5.16□□□□□ -1.58
HMGB1P09429 RPS17P13-201ENST00000448974 407 ntBASIC5.16□□□□□ -1.58
HMGB1P09429 RPS29P22-201ENST00000472363 168 ntBASIC5.16□□□□□ -1.58
HMGB1P09429 AL049874.1-201ENST00000489560 388 ntBASIC5.16□□□□□ -1.58
HMGB1P09429 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC5.16□□□□□ -1.58
HMGB1P09429 UBTFL10-201ENST00000528532 562 ntBASIC5.16□□□□□ -1.58
HMGB1P09429 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC5.16□□□□□ -1.58
HMGB1P09429 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC5.16□□□□□ -1.58
HMGB1P09429 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC5.16□□□□□ -1.58
HMGB1P09429 ZNF415P1-201ENST00000582279 1166 ntBASIC5.16□□□□□ -1.58
HMGB1P09429 RPL12P25-202ENST00000598100 674 ntBASIC5.16□□□□□ -1.58
HMGB1P09429 AL357094.1-201ENST00000603845 844 ntBASIC5.16□□□□□ -1.58
HMGB1P09429 AC107952.2-201ENST00000606048 486 ntBASIC5.16□□□□□ -1.58
HMGB1P09429 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
HMGB1P09429 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HMGB1P09429 MIR7703-201ENST00000620784 77 ntBASIC5.16□□□□□ -1.58
HMGB1P09429 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HMGB1P09429 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HMGB1P09429 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HMGB1P09429 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
HMGB1P09429 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC5.16□□□□□ -1.58
HMGB1P09429 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HMGB1P09429 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.16□□□□□ -1.58
HMGB1P09429 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HMGB1P09429 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC5.15□□□□□ -1.58
HMGB1P09429 AC092447.10-201ENST00000620607 1652 ntBASIC5.15□□□□□ -1.58
HMGB1P09429 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HMGB1P09429 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC5.15□□□□□ -1.58
HMGB1P09429 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HMGB1P09429 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HMGB1P09429 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
HMGB1P09429 RNU6-398P-201ENST00000384143 109 ntBASIC5.15□□□□□ -1.59
HMGB1P09429 RPS4XP9-201ENST00000405151 780 ntBASIC5.15□□□□□ -1.59
HMGB1P09429 PIGPP2-201ENST00000411569 458 ntBASIC5.15□□□□□ -1.59
HMGB1P09429 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.15□□□□□ -1.59
HMGB1P09429 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC5.15□□□□□ -1.59
HMGB1P09429 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC5.15□□□□□ -1.59
HMGB1P09429 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC5.15□□□□□ -1.59
HMGB1P09429 AC011998.1-201ENST00000433403 117 ntBASIC5.15□□□□□ -1.59
HMGB1P09429 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC5.15□□□□□ -1.59
HMGB1P09429 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC5.15□□□□□ -1.59
HMGB1P09429 MTND2P24-201ENST00000453434 806 ntBASIC5.15□□□□□ -1.59
HMGB1P09429 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC5.15□□□□□ -1.59
HMGB1P09429 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC5.15□□□□□ -1.59
HMGB1P09429 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC5.15□□□□□ -1.59
HMGB1P09429 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC5.15□□□□□ -1.59
HMGB1P09429 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC5.15□□□□□ -1.59
HMGB1P09429 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.15□□□□□ -1.59
HMGB1P09429 AP003497.1-201ENST00000528472 562 ntBASIC5.15□□□□□ -1.59
HMGB1P09429 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC5.15□□□□□ -1.59
HMGB1P09429 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC5.15□□□□□ -1.59
HMGB1P09429 MTND6P33-201ENST00000571794 183 ntBASIC5.15□□□□□ -1.59
HMGB1P09429 MIR5047-201ENST00000579212 100 ntBASIC5.15□□□□□ -1.59
HMGB1P09429 AL592436.1-201ENST00000605135 558 ntBASIC5.15□□□□□ -1.59
HMGB1P09429 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC5.15□□□□□ -1.59
HMGB1P09429 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.15□□□□□ -1.59
HMGB1P09429 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HMGB1P09429 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC5.15□□□□□ -1.59
HMGB1P09429 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
HMGB1P09429 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
HMGB1P09429 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HMGB1P09429 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HMGB1P09429 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HMGB1P09429 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC5.15□□□□□ -1.59
HMGB1P09429 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HMGB1P09429 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
HMGB1P09429 AC087359.1-201ENST00000508335 1740 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC5.14□□□□□ -1.59
HMGB1P09429 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
HMGB1P09429 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 RNA5SP175-201ENST00000364275 119 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 RNU1-132P-201ENST00000364300 164 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 RNA5SP505-201ENST00000364748 108 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 RNU6-637P-201ENST00000384050 107 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 RNA5SP38-201ENST00000410750 119 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC5.14□□□□□ -1.59
HMGB1P09429 BX842559.1-201ENST00000419615 532 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC5.14□□□□□ -1.59
HMGB1P09429 HIGD1AP4-201ENST00000430194 280 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 NDUFB4P6-201ENST00000436819 366 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 UBE2V1P13-201ENST00000436983 439 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC5.14□□□□□ -1.59
HMGB1P09429 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC5.14□□□□□ -1.59
HMGB1P09429 Z73417.1-201ENST00000447373 778 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 MTCO1P27-201ENST00000448269 226 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 RPL35AP15-201ENST00000468042 339 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 HSPE1P6-201ENST00000479457 291 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 AC041039.1-201ENST00000485656 536 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 RN7SL810P-201ENST00000493031 276 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
HMGB1P09429 PPBPP1-201ENST00000510807 373 ntBASIC5.14□□□□□ -1.59
HMGB1P09429 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC5.14□□□□□ -1.59
HMGB1P09429 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 133.8 ms