Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 CYCSP45-201ENST00000402289 315 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 AL356131.1-201ENST00000405826 414 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 MIR320C1-201ENST00000408566 88 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 RNU6-712P-201ENST00000410558 100 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXC11O43248 AC092447.6-201ENST00000414578 210 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 RAD23BP2-201ENST00000416003 1207 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 RAC1P3-201ENST00000416129 580 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 AC245052.5-201ENST00000416320 649 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 PTP4A1P5-201ENST00000420305 455 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 MTND4LP10-201ENST00000435146 291 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC11O43248 AL138799.3-201ENST00000438968 350 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 MTND5P14-201ENST00000441481 1267 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXC11O43248 MTND5P2-201ENST00000442927 1142 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 MTCYBP3-201ENST00000445588 1137 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 EEF1E1P1-201ENST00000446998 430 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 NPM1P49-201ENST00000448027 714 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 MTCO2P6-201ENST00000463134 685 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 RPL7P1-201ENST00000468161 747 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 RPL7P9-201ENST00000468715 747 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 RPL31P50-201ENST00000471002 296 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 AC104563.1-201ENST00000476147 376 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 AC024589.1-201ENST00000512207 263 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXC11O43248 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC4.24□□□□□ -1.73
HOXC11O43248 MTATP6P15-201ENST00000527233 835 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC11O43248 AC126177.3-201ENST00000551839 688 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXC11O43248 AC074050.1-201ENST00000563247 211 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC11O43248 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC4.24□□□□□ -1.73
HOXC11O43248 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
HOXC11O43248 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC11O43248 AC020914.6-201ENST00000594327 272 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 AL139344.1-201ENST00000605228 195 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 AL445264.1-201ENST00000621719 171 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
HOXC11O43248 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC11O43248 AP000526.1-201ENST00000603308 1388 ntBASIC4.24□□□□□ -1.73
HOXC11O43248 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC11O43248 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC11O43248 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXC11O43248 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXC11O43248 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC11O43248 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC11O43248 AC004925.1-201ENST00000624256 2706 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC11O43248 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC11O43248 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXC11O43248 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC11O43248 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC11O43248 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC11O43248 SNORA60-201ENST00000362396 134 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 VN1R8P-201ENST00000407739 893 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 HSPE1P12-201ENST00000412576 301 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC11O43248 MTND4P20-201ENST00000424125 869 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC11O43248 RPS6P15-201ENST00000431996 751 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXC11O43248 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC11O43248 AC006011.1-201ENST00000442758 349 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC11O43248 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXC11O43248 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC11O43248 snoU13.8-201ENST00000458890 104 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 AC079804.1-201ENST00000461922 436 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC11O43248 RPL21P129-201ENST00000491732 478 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC11O43248 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC11O43248 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC11O43248 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC11O43248 PPBPP1-201ENST00000510807 373 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 RNU6-678P-201ENST00000516832 109 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC11O43248 AC100770.1-201ENST00000532310 322 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC11O43248 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.23□□□□□ -1.73
HOXC11O43248 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXC11O43248 AC007687.1-201ENST00000602704 304 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 AL133507.1-201ENST00000605269 557 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 AL451086.1-201ENST00000605596 223 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 AC120349.3-201ENST00000624377 529 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC11O43248 OR6C71P-202ENST00000641886 1107 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.23□□□□□ -1.73
HOXC11O43248 MAPK10-372ENST00000641954 3413 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 EXOC5P1-201ENST00000510543 1969 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.23□□□□□ -1.73
HOXC11O43248 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
HOXC11O43248 AC087359.1-201ENST00000508335 1740 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.23□□□□□ -1.73
HOXC11O43248 AL031985.3-201ENST00000565390 2449 ntBASIC4.23□□□□□ -1.73
HOXC11O43248 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
HOXC11O43248 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms