Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL391684.1-202ENST00000641293 1636 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 Y_RNA.128-201ENST00000363391 112 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 Y_RNA.216-201ENST00000364205 93 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 PKIB-203ENST00000368446 556 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 RNU6-434P-201ENST00000384376 107 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 OR4K12P-201ENST00000406538 961 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 MIR548P-201ENST00000408336 84 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 BX284632.2-201ENST00000421091 399 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 FAR2P4-202ENST00000425399 584 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AL591212.2-201ENST00000433923 257 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 RPL26P6-201ENST00000440913 438 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AL359955.2-201ENST00000445380 353 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AL162388.1-201ENST00000450912 352 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 MRPS31P2-201ENST00000451581 518 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AC093166.4-201ENST00000457867 318 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 RNU6-953P-201ENST00000459154 107 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 RN7SL193P-201ENST00000491708 276 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AP002812.1-201ENST00000495378 474 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 MTND5P5-201ENST00000503764 376 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 ERHP1-201ENST00000523006 310 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AC009087.1-201ENST00000561827 369 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 MTCYBP13-201ENST00000578634 1093 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AC145423.1-201ENST00000605712 336 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 EIF3FP1-201ENST00000613970 806 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 MIR6071-201ENST00000616741 78 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AL355480.1-201ENST00000629041 99 ntBASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC4.55□□□□□ -1.68
CCDC140Q96MF4 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 ZNF682-201ENST00000358523 2161 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC020656.2-201ENST00000613291 5309 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 RNA5SP273-201ENST00000362484 113 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 Y_RNA.212-201ENST00000364177 102 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 SNORD116-11-201ENST00000383882 92 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 BX842559.1-201ENST00000419615 532 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 HMGB1P27-201ENST00000431429 603 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 FABP5P14-201ENST00000437273 393 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC096775.1-201ENST00000437724 448 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 KRT8P51-201ENST00000438938 274 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC023141.8-201ENST00000442554 208 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC104472.2-201ENST00000469035 601 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC006539.1-201ENST00000481419 501 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC025458.1-201ENST00000506046 166 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 RNU2-69P-201ENST00000516061 100 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 RN7SKP258-201ENST00000517151 304 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 TRMT10BP1-201ENST00000519377 943 ntBASIC4.54□□□□□ -1.68
CCDC140Q96MF4 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 MAL2-208ENST00000523307 556 ntTSL 4 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC4.54□□□□□ -1.68
CCDC140Q96MF4 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms