Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SKA3Q8IX90 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SKA3Q8IX90 RNU6-374P-201ENST00000364146 108 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 RNA5SP42-201ENST00000364278 115 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 RNU6-283P-201ENST00000364788 107 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 AL359837.1-201ENST00000381357 287 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 SKINT1L-201ENST00000401057 817 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 RPL31P2-201ENST00000413849 377 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 OSTCP5-201ENST00000425293 453 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 DPRXP1-201ENST00000426312 460 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC006989.1-201ENST00000427212 131 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC018644.1-201ENST00000429934 551 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 B3GNT2P1-201ENST00000434960 952 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC092393.1-201ENST00000439625 742 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC104164.3-201ENST00000467363 1258 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC146507.1-201ENST00000468335 354 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SKA3Q8IX90 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC110768.1-201ENST00000509222 400 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC104619.4-201ENST00000510773 249 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SKA3Q8IX90 SAP18P1-201ENST00000512058 390 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC104057.1-201ENST00000515547 497 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 RN7SKP18-201ENST00000516005 275 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 SNORA70.18-201ENST00000516696 98 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 RNU6-579P-201ENST00000516879 102 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 PAICSP4-201ENST00000517543 1253 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 AP000790.1-201ENST00000528891 737 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 OR5AP1P-201ENST00000529730 940 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC093519.1-201ENST00000566109 298 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 OR4G1P-201ENST00000588632 938 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC012442.3-202ENST00000636742 206 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 AC117529.2-201ENST00000512159 2068 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SKA3Q8IX90 PABPC1P7-201ENST00000413177 1513 ntBASIC3.14□□□□□ -1.91
SKA3Q8IX90 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC3.14□□□□□ -1.91
SKA3Q8IX90 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SKA3Q8IX90 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SKA3Q8IX90 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SKA3Q8IX90 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
SKA3Q8IX90 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SKA3Q8IX90 SNORA5A-201ENST00000384111 134 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 MIR649-201ENST00000384843 97 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 SNORA48.8-201ENST00000391324 134 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 AL355379.1-201ENST00000405542 640 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 VN1R51P-201ENST00000411675 945 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 SYF2P2-201ENST00000417620 583 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC092634.6-201ENST00000418558 192 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 Z93242.1-201ENST00000427102 353 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.13□□□□□ -1.91
SKA3Q8IX90 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.13□□□□□ -1.91
SKA3Q8IX90 MRPS18BP2-201ENST00000434310 759 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.13□□□□□ -1.91
SKA3Q8IX90 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.13□□□□□ -1.91
SKA3Q8IX90 AL133547.1-201ENST00000448546 220 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 snoU109.3-201ENST00000459477 145 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC092754.2-201ENST00000463506 460 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC084357.1-201ENST00000473404 255 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.13□□□□□ -1.91
SKA3Q8IX90 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.13□□□□□ -1.91
SKA3Q8IX90 AP001207.2-201ENST00000519490 539 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 MED28P5-201ENST00000528254 438 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.13□□□□□ -1.91
SKA3Q8IX90 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC092470.1-201ENST00000546187 132 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.13□□□□□ -1.91
SKA3Q8IX90 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.13□□□□□ -1.91
SKA3Q8IX90 SNORD39.3-201ENST00000584451 71 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC091057.3-201ENST00000602684 733 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 GAS5-AS1-201ENST00000602767 694 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 HMGN2P28-201ENST00000606102 262 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC144521.1-201ENST00000607148 956 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC009237.15-201ENST00000610252 501 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 AC068722.2-201ENST00000618734 544 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 PLCE1P1-201ENST00000622094 305 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 MFSD8-245ENST00000641743 948 ntBASIC3.13□□□□□ -1.91
SKA3Q8IX90 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SKA3Q8IX90 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
SKA3Q8IX90 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms