Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.14□□□□□ -1.91
RFX3P48380 OR5H3P-201ENST00000502817 919 ntBASIC3.14□□□□□ -1.91
RFX3P48380 OR5H5P-201ENST00000503164 928 ntBASIC3.14□□□□□ -1.91
RFX3P48380 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.14□□□□□ -1.91
RFX3P48380 AC011352.3-201ENST00000505162 593 ntBASIC3.14□□□□□ -1.91
RFX3P48380 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
RFX3P48380 AC093331.1-201ENST00000521474 169 ntBASIC3.14□□□□□ -1.91
RFX3P48380 OR8K4P-201ENST00000534608 872 ntBASIC3.14□□□□□ -1.91
RFX3P48380 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.14□□□□□ -1.91
RFX3P48380 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.14□□□□□ -1.91
RFX3P48380 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.14□□□□□ -1.91
RFX3P48380 AC087481.2-201ENST00000565492 330 ntBASIC3.14□□□□□ -1.91
RFX3P48380 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.14□□□□□ -1.91
RFX3P48380 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.14□□□□□ -1.91
RFX3P48380 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.14□□□□□ -1.91
RFX3P48380 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
RFX3P48380 AC244258.1-201ENST00000637553 1071 ntBASIC3.14□□□□□ -1.91
RFX3P48380 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.14□□□□□ -1.91
RFX3P48380 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
RFX3P48380 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
RFX3P48380 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
RFX3P48380 ZNF542P-204ENST00000482727 1305 ntBASIC3.14□□□□□ -1.91
RFX3P48380 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
RFX3P48380 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
RFX3P48380 MTCO1P12-201ENST00000414273 1543 ntBASIC3.14□□□□□ -1.91
RFX3P48380 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
RFX3P48380 RNA5SP383-201ENST00000362934 120 ntBASIC3.13□□□□□ -1.91
RFX3P48380 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.13□□□□□ -1.91
RFX3P48380 DEFB109C-201ENST00000382575 264 ntBASIC3.13□□□□□ -1.91
RFX3P48380 DEFB109B-201ENST00000382656 264 ntBASIC3.13□□□□□ -1.91
RFX3P48380 RNU6-761P-201ENST00000384148 107 ntBASIC3.13□□□□□ -1.91
RFX3P48380 MIR490-201ENST00000384865 128 ntBASIC3.13□□□□□ -1.91
RFX3P48380 RNA5SP129-201ENST00000410276 118 ntBASIC3.13□□□□□ -1.91
RFX3P48380 USP9YP19-201ENST00000412165 485 ntBASIC3.13□□□□□ -1.91
RFX3P48380 OR51A3P-201ENST00000413596 924 ntBASIC3.13□□□□□ -1.91
RFX3P48380 BX664727.1-201ENST00000416024 466 ntBASIC3.13□□□□□ -1.91
RFX3P48380 OR1AA1P-201ENST00000419597 916 ntBASIC3.13□□□□□ -1.91
RFX3P48380 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.13□□□□□ -1.91
RFX3P48380 FNDC3CP-201ENST00000420795 1155 ntBASIC3.13□□□□□ -1.91
RFX3P48380 HSFY1P1-201ENST00000423928 1178 ntBASIC3.13□□□□□ -1.91
RFX3P48380 RPL23AP82-202ENST00000427528 469 ntBASIC3.13□□□□□ -1.91
RFX3P48380 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.13□□□□□ -1.91
RFX3P48380 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC3.13□□□□□ -1.91
RFX3P48380 snoU13.22-201ENST00000459428 104 ntBASIC3.13□□□□□ -1.91
RFX3P48380 CENPBD1P1-201ENST00000464061 469 ntBASIC3.13□□□□□ -1.91
RFX3P48380 RPS27AP1-201ENST00000475545 471 ntBASIC3.13□□□□□ -1.91
RFX3P48380 RPS4XP6-201ENST00000477670 797 ntBASIC3.13□□□□□ -1.91
RFX3P48380 AC012181.1-201ENST00000479895 423 ntBASIC3.13□□□□□ -1.91
RFX3P48380 MTCO3P35-201ENST00000485582 781 ntBASIC3.13□□□□□ -1.91
RFX3P48380 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.13□□□□□ -1.91
RFX3P48380 MTCO2P32-201ENST00000514865 403 ntBASIC3.13□□□□□ -1.91
RFX3P48380 MIR2276-201ENST00000516886 89 ntBASIC3.13□□□□□ -1.91
RFX3P48380 IGKV2-26-201ENST00000518305 343 ntBASIC3.13□□□□□ -1.91
RFX3P48380 AC068657.1-201ENST00000520807 306 ntBASIC3.13□□□□□ -1.91
RFX3P48380 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.13□□□□□ -1.91
RFX3P48380 AC007458.1-201ENST00000542812 373 ntBASIC3.13□□□□□ -1.91
RFX3P48380 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.13□□□□□ -1.91
RFX3P48380 AC011611.1-201ENST00000552179 197 ntBASIC3.13□□□□□ -1.91
RFX3P48380 AC011611.5-201ENST00000552477 578 ntBASIC3.13□□□□□ -1.91
RFX3P48380 AL136520.1-202ENST00000555494 763 ntBASIC3.13□□□□□ -1.91
RFX3P48380 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.13□□□□□ -1.91
RFX3P48380 AC093510.2-201ENST00000562820 896 ntBASIC3.13□□□□□ -1.91
RFX3P48380 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.13□□□□□ -1.91
RFX3P48380 MIR5186-201ENST00000577504 120 ntBASIC3.13□□□□□ -1.91
RFX3P48380 AC015917.1-201ENST00000579654 510 ntBASIC3.13□□□□□ -1.91
RFX3P48380 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.13□□□□□ -1.91
RFX3P48380 AC024220.1-201ENST00000603675 484 ntBASIC3.13□□□□□ -1.91
RFX3P48380 AL512506.1-201ENST00000613918 449 ntBASIC3.13□□□□□ -1.91
RFX3P48380 AC084757.4-201ENST00000616350 526 ntBASIC3.13□□□□□ -1.91
RFX3P48380 AC106730.3-201ENST00000624568 641 ntBASIC3.13□□□□□ -1.91
RFX3P48380 SNORA50A-202ENST00000629536 136 ntBASIC3.13□□□□□ -1.91
RFX3P48380 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
RFX3P48380 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.13□□□□□ -1.91
RFX3P48380 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
RFX3P48380 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
RFX3P48380 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.13□□□□□ -1.91
RFX3P48380 AL672296.1-201ENST00000427780 2158 ntBASIC3.12□□□□□ -1.91
RFX3P48380 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.12□□□□□ -1.91
RFX3P48380 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.12□□□□□ -1.91
RFX3P48380 SNORA71.3-201ENST00000362582 128 ntBASIC3.12□□□□□ -1.91
RFX3P48380 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC3.12□□□□□ -1.91
RFX3P48380 RAD23BP2-201ENST00000416003 1207 ntBASIC3.12□□□□□ -1.91
RFX3P48380 AC233981.1-201ENST00000423224 461 ntBASIC3.12□□□□□ -1.91
RFX3P48380 AC006548.1-201ENST00000427470 102 ntBASIC3.12□□□□□ -1.91
RFX3P48380 HSFY3P-201ENST00000444242 1191 ntBASIC3.12□□□□□ -1.91
RFX3P48380 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.12□□□□□ -1.91
RFX3P48380 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.12□□□□□ -1.91
RFX3P48380 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.12□□□□□ -1.91
RFX3P48380 AL096803.2-201ENST00000450032 677 ntBASIC3.12□□□□□ -1.91
RFX3P48380 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.12□□□□□ -1.91
RFX3P48380 SSXP4-201ENST00000451349 245 ntBASIC3.12□□□□□ -1.91
RFX3P48380 HMGN3P1-201ENST00000453847 193 ntBASIC3.12□□□□□ -1.91
RFX3P48380 RPL32P14-201ENST00000463196 378 ntBASIC3.12□□□□□ -1.91
RFX3P48380 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.12□□□□□ -1.91
RFX3P48380 MTCO2P9-201ENST00000503214 694 ntBASIC3.12□□□□□ -1.91
RFX3P48380 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.12□□□□□ -1.91
RFX3P48380 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.12□□□□□ -1.91
RFX3P48380 PRELID3BP4-201ENST00000515476 571 ntBASIC3.12□□□□□ -1.91
RFX3P48380 SNORA64.4-201ENST00000516632 81 ntBASIC3.12□□□□□ -1.91
RFX3P48380 AC104027.1-201ENST00000521887 300 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms