Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 MTCYBP23-201ENST00000558717 1102 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 RPL21P12-201ENST00000559810 515 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 MIR3912-201ENST00000577566 105 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 RPP40P2-201ENST00000603596 712 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AP000240.1-201ENST00000609910 452 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 MIR7975-201ENST00000619350 68 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AL121895.2-201ENST00000619558 447 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 U6.98-201ENST00000637157 84 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 MTCO1P12-201ENST00000414273 1543 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 AC106754.1-201ENST00000562632 1513 ntBASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PCDHGA1Q9Y5H4 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 RNU6-600P-201ENST00000362524 99 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC007066.1-201ENST00000392902 381 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AP000567.1-201ENST00000406413 156 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 SNORA11.2-201ENST00000408318 127 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 MIR1251-201ENST00000408552 70 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 PGBD4P8-201ENST00000412993 562 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 Z75741.2-201ENST00000417272 1167 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 HIGD1AP12-201ENST00000427832 281 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 RPL31P54-201ENST00000429803 370 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AL645638.1-201ENST00000440519 361 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 OR10R1P-201ENST00000441524 1141 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 RPS24P6-201ENST00000452670 400 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 RN7SL293P-201ENST00000481765 281 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 GTF2IP9-201ENST00000502460 301 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC093767.1-201ENST00000504523 156 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 MTCYBP37-201ENST00000510642 1133 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 RNU6-1073P-201ENST00000517182 106 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 OR10V3P-201ENST00000525712 725 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AP001189.2-201ENST00000527320 189 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AL121603.1-201ENST00000553815 142 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 MIR3690-201ENST00000580266 75 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AL390838.2-201ENST00000602394 274 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC128687.1-201ENST00000605304 619 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AL031666.3-201ENST00000609320 1006 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC009318.4-201ENST00000620496 486 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AL359715.5-201ENST00000623431 443 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC092184.1-201ENST00000625042 715 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AL049781.1-201ENST00000623195 3585 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 Z99496.1-201ENST00000469424 1477 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC027287.1-201ENST00000553115 1453 ntBASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.77□□□□□ -1.81
PCDHGA1Q9Y5H4 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 RNA5SP258-201ENST00000362750 119 ntBASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 snoZ40.1-201ENST00000364540 72 ntBASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 SNORD116-12-201ENST00000384468 92 ntBASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 SNORD65.1-201ENST00000390889 71 ntBASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 RPL7AP73-201ENST00000413490 353 ntBASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 RAD23BP2-201ENST00000416003 1207 ntBASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.76□□□□□ -1.81
PCDHGA1Q9Y5H4 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms