Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 AL031313.1-201ENST00000448435 256 ntBASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 TMED11P-201ENST00000479478 690 ntBASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 RPL21P131-201ENST00000497298 483 ntBASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 RNU2-58P-201ENST00000516403 183 ntBASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 MTCYBP41-201ENST00000528913 1123 ntBASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 AL389895.1-201ENST00000554127 252 ntBASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 MTND3P13-201ENST00000574391 343 ntBASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 RN7SL339P-201ENST00000580597 296 ntBASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 AL160237.3-201ENST00000604114 1013 ntBASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 AC092954.1-201ENST00000609121 445 ntBASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 MIR4278-201ENST00000636094 69 ntBASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 AP000553.6-201ENST00000641242 118 ntBASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 AP005901.5-201ENST00000545779 1796 ntBASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
ATG4BQ9Y4P1 MAPK10-372ENST00000641954 3413 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 SNORD65.1-201ENST00000390889 71 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AL138880.1-201ENST00000405824 642 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 RAB9AP3-201ENST00000412737 573 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 MTND2P16-201ENST00000419987 799 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 FNDC3CP-201ENST00000420795 1155 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 MTCO3P1-205ENST00000422088 832 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 GTF2IP7-202ENST00000436677 309 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 SKP1P1-201ENST00000438081 489 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 RAB9AP1-201ENST00000449393 573 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AC112492.1-201ENST00000449607 712 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AC099563.1-201ENST00000456086 418 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 RPL7P15-201ENST00000461190 712 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 PABPC1P3-201ENST00000469174 459 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 RPL7L1P8-201ENST00000469911 741 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 NCOR1P1-202ENST00000486162 291 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 UBE2CP3-201ENST00000502715 450 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 SNORA48.10-201ENST00000516965 160 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 RNU6-1231P-201ENST00000517185 103 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 PAICSP4-201ENST00000517543 1253 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 TRMT10BP1-201ENST00000519377 943 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AP004371.1-201ENST00000525240 214 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 TRAV15-201ENST00000556680 249 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AC099489.2-201ENST00000574976 260 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 MTCO2P2-201ENST00000591258 225 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 VN1R83P-201ENST00000595685 445 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AC025588.3-201ENST00000604182 274 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AL391497.1-201ENST00000608671 547 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AC009318.4-201ENST00000620496 486 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AC012442.3-202ENST00000636742 206 ntBASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.47□□□□□ -1.85
ATG4BQ9Y4P1 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
ATG4BQ9Y4P1 OTUD4P1-201ENST00000237841 3067 ntBASIC3.46□□□□□ -1.86
ATG4BQ9Y4P1 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
ATG4BQ9Y4P1 ZNF29P-201ENST00000225587 168 ntBASIC3.46□□□□□ -1.86
ATG4BQ9Y4P1 snoZ40.1-201ENST00000364540 72 ntBASIC3.46□□□□□ -1.86
ATG4BQ9Y4P1 Y_RNA.493-201ENST00000384422 102 ntBASIC3.46□□□□□ -1.86
ATG4BQ9Y4P1 SNORD3H-201ENST00000384486 214 ntBASIC3.46□□□□□ -1.86
ATG4BQ9Y4P1 MIR23B-201ENST00000384832 97 ntBASIC3.46□□□□□ -1.86
ATG4BQ9Y4P1 RNU6-821P-201ENST00000390995 107 ntBASIC3.46□□□□□ -1.86
ATG4BQ9Y4P1 AL583834.1-201ENST00000406943 343 ntBASIC3.46□□□□□ -1.86
ATG4BQ9Y4P1 RPL23AP47-201ENST00000408017 460 ntBASIC3.46□□□□□ -1.86
ATG4BQ9Y4P1 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.46□□□□□ -1.86
ATG4BQ9Y4P1 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms