Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AL136164.3-201ENST00000624429 3978 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 RNA5SP124-201ENST00000362739 110 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 RNA5SP22-201ENST00000365393 109 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 PTMAP5-201ENST00000393073 333 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 RAB9AP3-201ENST00000412737 573 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC108032.1-201ENST00000416706 207 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 RPL37P21-201ENST00000435890 276 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC105402.2-201ENST00000438503 358 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AL357520.1-201ENST00000441557 453 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 RAB9AP1-201ENST00000449393 573 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 PDSS1P2-201ENST00000449397 678 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 APOOP2-201ENST00000461561 539 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AL591473.1-201ENST00000464297 313 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 RPL7P22-201ENST00000466005 733 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 PPIAP15-201ENST00000479662 484 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC011825.1-201ENST00000484967 388 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC109464.2-201ENST00000510242 943 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 HMGB1P19-201ENST00000517578 577 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AP004247.1-201ENST00000531556 1289 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC037471.2-201ENST00000564941 598 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AP003465.2-201ENST00000602571 373 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC020634.1-201ENST00000608701 549 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AC022106.2-201ENST00000620114 757 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 AP001005.3-201ENST00000622049 129 ntBASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
SMC1BQ8NDV3 TEX21P-201ENST00000447107 1476 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 SNRPFP1-201ENST00000414761 252 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 TRAPPC2P10-201ENST00000415662 323 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 OFD1P13Y-201ENST00000431179 1232 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 OR2B8P-201ENST00000432841 938 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AL353597.2-202ENST00000434901 373 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 RNU7-136P-201ENST00000458819 69 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AC010683.1-201ENST00000473673 378 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AF213884.2-201ENST00000510417 903 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 FABP5P5-201ENST00000515537 406 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AL133457.1-201ENST00000564251 987 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 MAGOH2P-202ENST00000584384 429 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AP000403.1-201ENST00000603349 851 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 SEPT7P9-203ENST00000604116 343 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AC008498.1-201ENST00000613012 531 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AC027807.2-201ENST00000616099 408 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 MESTIT1_2.1-201ENST00000616328 235 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AC093591.3-201ENST00000634516 308 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 AC000123.3-201ENST00000624029 4975 ntBASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.32□□□□□ -1.56
SMC1BQ8NDV3 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.31□□□□□ -1.56
SMC1BQ8NDV3 AP002907.1-201ENST00000606361 1430 ntBASIC5.31□□□□□ -1.56
SMC1BQ8NDV3 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.31□□□□□ -1.56
SMC1BQ8NDV3 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC5.31□□□□□ -1.56
SMC1BQ8NDV3 DCAF13P1-201ENST00000495256 1330 ntBASIC5.31□□□□□ -1.56
SMC1BQ8NDV3 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SMC1BQ8NDV3 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SMC1BQ8NDV3 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC5.31□□□□□ -1.56
SMC1BQ8NDV3 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.31□□□□□ -1.56
SMC1BQ8NDV3 Y_RNA.6-201ENST00000362350 114 ntBASIC5.31□□□□□ -1.56
SMC1BQ8NDV3 RNU5E-5P-201ENST00000365379 116 ntBASIC5.31□□□□□ -1.56
SMC1BQ8NDV3 U8.14-201ENST00000390843 143 ntBASIC5.31□□□□□ -1.56
SMC1BQ8NDV3 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms