Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXD3P31249 FABP3P2-201ENST00000453169 399 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AC009963.2-201ENST00000453431 138 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXD3P31249 AC013267.1-201ENST00000458227 267 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC3.73□□□□□ -1.81
HOXD3P31249 FAM92A1P2-202ENST00000504766 877 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXD3P31249 AC093677.1-201ENST00000514414 678 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXD3P31249 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.73□□□□□ -1.81
HOXD3P31249 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXD3P31249 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD3P31249 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.73□□□□□ -1.81
HOXD3P31249 CENPUP2-201ENST00000555897 1186 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AL049839.1-201ENST00000556151 657 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXD3P31249 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD3P31249 AC124068.1-201ENST00000563131 678 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AP005205.1-201ENST00000563503 508 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXD3P31249 MIR4284-201ENST00000578924 81 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXD3P31249 AC010424.2-201ENST00000607594 443 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AC080013.4-201ENST00000607624 649 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXD3P31249 AL391813.2-201ENST00000609113 322 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AC004009.2-201ENST00000623016 728 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 AL732618.1-201ENST00000623251 301 ntBASIC3.73□□□□□ -1.81
HOXD3P31249 RNF123-214ENST00000629802 207 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXD3P31249 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD3P31249 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD3P31249 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD3P31249 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD3P31249 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD3P31249 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXD3P31249 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD3P31249 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC3.73□□□□□ -1.81
HOXD3P31249 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD3P31249 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXD3P31249 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.73□□□□□ -1.81
HOXD3P31249 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.73□□□□□ -1.81
HOXD3P31249 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD3P31249 MAPK10-320ENST00000641462 6696 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AC092376.2-201ENST00000622621 4116 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXD3P31249 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXD3P31249 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD3P31249 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
HOXD3P31249 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXD3P31249 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXD3P31249 FARSBP1-201ENST00000435808 1778 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXD3P31249 OR4K15-201ENST00000305051 1216 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD3P31249 OR5J1P-201ENST00000313544 939 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 NAP1L4P1-201ENST00000319092 1157 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
HOXD3P31249 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD3P31249 Y_RNA.88-201ENST00000363029 99 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD3P31249 RNU6-1279P-201ENST00000383917 103 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 HSPD1P16-201ENST00000402302 394 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AL590002.1-201ENST00000406554 418 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 SNORA11-201ENST00000408789 128 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 RNA5SP345-201ENST00000410646 108 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXD3P31249 AC245052.5-201ENST00000416320 649 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 NUP35P2-201ENST00000416748 943 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 RPL30P16-201ENST00000419341 429 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 RPL31P45-201ENST00000419532 356 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AC069157.1-201ENST00000421749 137 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXD3P31249 AC104333.2-201ENST00000422630 192 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXD3P31249 MTND3P21-201ENST00000433774 331 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 ARL2BPP10-201ENST00000446487 531 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AC079448.1-201ENST00000449377 373 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXD3P31249 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXD3P31249 AL356981.1-201ENST00000454879 684 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXD3P31249 AC010326.1-201ENST00000462726 602 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 RPL5P30-201ENST00000465511 891 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AP001025.2-201ENST00000490908 477 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXD3P31249 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXD3P31249 PTGES3P3-201ENST00000511479 482 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXD3P31249 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXD3P31249 RNU6-714P-201ENST00000516963 103 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 FAM92A1P1-201ENST00000528023 890 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXD3P31249 AC009643.1-201ENST00000532030 391 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXD3P31249 AC092470.1-201ENST00000546187 132 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 AC123904.2-201ENST00000548059 300 ntBASIC3.72□□□□□ -1.81
HOXD3P31249 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXD3P31249 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC3.72□□□□□ -1.81
HOXD3P31249 AL391840.1-201ENST00000571144 367 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms