Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
SDC1P18827 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC1P18827 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
SDC1P18827 RNU6-492P-201ENST00000363035 104 ntBASIC3.28□□□□□ -1.88
SDC1P18827 RNU6-657P-201ENST00000383904 107 ntBASIC3.28□□□□□ -1.88
SDC1P18827 SNORD116-12-201ENST00000384468 92 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AL590704.1-201ENST00000402856 794 ntBASIC3.28□□□□□ -1.88
SDC1P18827 RNA5SP31-201ENST00000411144 127 ntBASIC3.28□□□□□ -1.88
SDC1P18827 Z99755.1-201ENST00000414048 380 ntBASIC3.28□□□□□ -1.88
SDC1P18827 Z75741.2-201ENST00000417272 1167 ntBASIC3.28□□□□□ -1.88
SDC1P18827 PTP4A1P5-201ENST00000420305 455 ntBASIC3.28□□□□□ -1.88
SDC1P18827 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.28□□□□□ -1.88
SDC1P18827 MTCO3P1-205ENST00000422088 832 ntBASIC3.28□□□□□ -1.88
SDC1P18827 MTCO2P23-201ENST00000425216 680 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC3.28□□□□□ -1.88
SDC1P18827 CYCSP4-201ENST00000429682 331 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AL445584.1-201ENST00000431451 330 ntBASIC3.28□□□□□ -1.88
SDC1P18827 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC1P18827 OR10R1P-201ENST00000441524 1141 ntBASIC3.28□□□□□ -1.88
SDC1P18827 HMGB3P6-201ENST00000444896 598 ntBASIC3.28□□□□□ -1.88
SDC1P18827 HMGN2P21-201ENST00000447764 270 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC1P18827 AC073387.1-201ENST00000453261 709 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AC006539.3-201ENST00000454258 129 ntBASIC3.28□□□□□ -1.88
SDC1P18827 TVP23BP2-201ENST00000455082 615 ntBASIC3.28□□□□□ -1.88
SDC1P18827 MTCO3P2-201ENST00000457365 171 ntBASIC3.28□□□□□ -1.88
SDC1P18827 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC3.28□□□□□ -1.88
SDC1P18827 RPL23AP67-201ENST00000465341 474 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC3.28□□□□□ -1.88
SDC1P18827 RPL21P131-201ENST00000497298 483 ntBASIC3.28□□□□□ -1.88
SDC1P18827 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC1P18827 BOLA3P3-201ENST00000505182 232 ntBASIC3.28□□□□□ -1.88
SDC1P18827 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC3.28□□□□□ -1.88
SDC1P18827 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC1P18827 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SDC1P18827 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.28□□□□□ -1.88
SDC1P18827 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.28□□□□□ -1.88
SDC1P18827 RN7SKP157-201ENST00000516174 282 ntBASIC3.28□□□□□ -1.88
SDC1P18827 SCARNA1-201ENST00000517138 166 ntBASIC3.28□□□□□ -1.88
SDC1P18827 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.28□□□□□ -1.88
SDC1P18827 OR10V3P-201ENST00000525712 725 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AL389895.1-201ENST00000554127 252 ntBASIC3.28□□□□□ -1.88
SDC1P18827 MIR3912-201ENST00000577566 105 ntBASIC3.28□□□□□ -1.88
SDC1P18827 MIR4509-3-201ENST00000578671 94 ntBASIC3.28□□□□□ -1.88
SDC1P18827 MIR4509-2-201ENST00000583920 94 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AC245884.10-201ENST00000597355 337 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AC025588.3-201ENST00000604182 274 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AC024941.1-201ENST00000612250 334 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AL138478.1-201ENST00000612252 832 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AL354976.1-201ENST00000613843 387 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AC006213.4-201ENST00000616184 634 ntBASIC3.28□□□□□ -1.88
SDC1P18827 MIR4509-1-201ENST00000618224 94 ntBASIC3.28□□□□□ -1.88
SDC1P18827 OR1S1-201ENST00000624470 978 ntBASIC3.28□□□□□ -1.88
SDC1P18827 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SDC1P18827 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SDC1P18827 Z99496.1-201ENST00000469424 1477 ntBASIC3.28□□□□□ -1.88
SDC1P18827 AC130650.2-201ENST00000618736 2403 ntBASIC3.28□□□□□ -1.89
SDC1P18827 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SDC1P18827 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SDC1P18827 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
SDC1P18827 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
SDC1P18827 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SDC1P18827 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
SDC1P18827 AL023807.1-201ENST00000407932 359 ntBASIC3.27□□□□□ -1.89
SDC1P18827 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC3.27□□□□□ -1.89
SDC1P18827 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.27□□□□□ -1.89
SDC1P18827 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.27□□□□□ -1.89
SDC1P18827 OFD1P18Y-201ENST00000420889 959 ntBASIC3.27□□□□□ -1.89
SDC1P18827 GLRXP1-201ENST00000423261 334 ntBASIC3.27□□□□□ -1.89
SDC1P18827 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SDC1P18827 ARF4P2-201ENST00000430209 526 ntBASIC3.27□□□□□ -1.89
SDC1P18827 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SDC1P18827 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.27□□□□□ -1.89
SDC1P18827 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.27□□□□□ -1.89
SDC1P18827 AC097262.1-201ENST00000452559 548 ntBASIC3.27□□□□□ -1.89
SDC1P18827 HMGB3P30-201ENST00000457863 606 ntBASIC3.27□□□□□ -1.89
SDC1P18827 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
SDC1P18827 AC087312.1-201ENST00000471411 480 ntBASIC3.27□□□□□ -1.89
SDC1P18827 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.27□□□□□ -1.89
SDC1P18827 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SDC1P18827 MTCO3P44-201ENST00000510977 541 ntBASIC3.27□□□□□ -1.89
SDC1P18827 RN7SKP18-201ENST00000516005 275 ntBASIC3.27□□□□□ -1.89
SDC1P18827 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.27□□□□□ -1.89
SDC1P18827 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC3.27□□□□□ -1.89
SDC1P18827 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.27□□□□□ -1.89
SDC1P18827 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.27□□□□□ -1.89
SDC1P18827 OR6C73P-201ENST00000546432 358 ntBASIC3.27□□□□□ -1.89
SDC1P18827 AC084824.1-201ENST00000550917 1005 ntBASIC3.27□□□□□ -1.89
SDC1P18827 LSM6P2-201ENST00000552208 177 ntBASIC3.27□□□□□ -1.89
SDC1P18827 MTCYBP27-201ENST00000555160 670 ntBASIC3.27□□□□□ -1.89
SDC1P18827 MTCYBP23-201ENST00000558717 1102 ntBASIC3.27□□□□□ -1.89
SDC1P18827 SULT1C2P1-202ENST00000562418 459 ntBASIC3.27□□□□□ -1.89
SDC1P18827 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.27□□□□□ -1.89
SDC1P18827 MIR3186-201ENST00000577404 85 ntBASIC3.27□□□□□ -1.89
SDC1P18827 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.27□□□□□ -1.89
SDC1P18827 AC091946.2-201ENST00000606105 291 ntBASIC3.27□□□□□ -1.89
SDC1P18827 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC3.27□□□□□ -1.89
SDC1P18827 AC092954.1-201ENST00000609121 445 ntBASIC3.27□□□□□ -1.89
SDC1P18827 AL157392.4-201ENST00000609756 345 ntBASIC3.27□□□□□ -1.89
SDC1P18827 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms