Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC39Q9UFE4 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 SNORA32.2-201ENST00000384049 122 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 MIR320B1-201ENST00000390209 79 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 Y_RNA.618-201ENST00000410949 107 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 RNU6-1068P-201ENST00000410958 103 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 SNRPFP1-201ENST00000414761 252 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 ELOCP4-201ENST00000420090 333 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 E2F6P2-201ENST00000420708 748 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AL358176.3-201ENST00000420757 454 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 GAPDHP49-201ENST00000421421 961 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 TEX41-204ENST00000423031 491 ntTSL 4 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 RPL7P57-201ENST00000423238 740 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 EI24P4-201ENST00000423683 1078 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC004980.3-201ENST00000447046 365 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC022431.1-201ENST00000450941 438 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 RPL18AP17-201ENST00000455326 198 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC010307.1-201ENST00000467206 836 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 RPS4XP1-201ENST00000482189 787 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 ATP5LP3-201ENST00000514223 304 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 RNA5SP216-201ENST00000516111 123 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC013828.2-201ENST00000532487 235 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 MIR4307-201ENST00000582802 84 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 HMGN1P30-201ENST00000589286 268 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC068790.5-201ENST00000602741 355 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 NUTF2P8-201ENST00000604593 363 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC092807.2-201ENST00000609367 243 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AL356585.4-201ENST00000623078 1229 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AL732618.1-201ENST00000623251 301 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 ATM-228ENST00000639240 498 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC107068.1-201ENST00000563286 4218 ntBASIC5.79□□□□□ -1.48
CCDC39Q9UFE4 AC235565.1-201ENST00000456962 1325 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC067945.1-201ENST00000342609 618 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 RN7SKP113-201ENST00000363891 295 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 RNU1-39P-201ENST00000383897 165 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AP000580.1-201ENST00000404439 358 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 RNU6-1148P-201ENST00000410992 104 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AL953862.1-201ENST00000423016 168 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC099563.1-201ENST00000456086 418 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 RN7SL443P-201ENST00000464331 290 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 RPS3AP50-201ENST00000487064 803 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC023194.1-201ENST00000493084 308 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC024558.1-201ENST00000505008 528 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC005741.1-201ENST00000511094 432 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 RNU6-1004P-201ENST00000516584 111 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 BTF3P12-201ENST00000519620 469 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 LINC00622-201ENST00000562811 1570 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC010591.1-201ENST00000603941 649 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC080078.3-201ENST00000605407 463 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.78□□□□□ -1.48
CCDC39Q9UFE4 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.78□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms