Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AC092641.1-201ENST00000440229 772 ntBASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AC017099.1-201ENST00000448261 1028 ntBASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AC006480.1-201ENST00000449887 378 ntBASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 RPS20P24-201ENST00000457473 361 ntBASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 RN7SKP57-201ENST00000517248 293 ntBASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AC010735.1-201ENST00000567305 1026 ntBASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 RPAP2P1-201ENST00000603626 1168 ntBASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AP000238.1-201ENST00000608759 426 ntBASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AL392088.2-201ENST00000637607 285 ntBASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AC116096.1-201ENST00000566804 2314 ntBASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AL365440.1-201ENST00000436135 2167 ntBASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 MFSD8-236ENST00000641509 4050 ntBASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HDDC3Q8N4P3 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 BDP1P-201ENST00000582658 1990 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 RNA5SP295-201ENST00000362655 121 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 SNORA63.3-201ENST00000362682 132 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 DEFB109C-201ENST00000382575 264 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 DEFB109B-201ENST00000382656 264 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 RNU6-730P-201ENST00000383954 104 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AL133264.1-201ENST00000407157 562 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 RPL23AP47-201ENST00000408017 460 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 BX842559.1-201ENST00000419615 532 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 OFD1P2Y-201ENST00000421895 1149 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AC005345.1-201ENST00000431868 217 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AL356535.1-201ENST00000440335 398 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AC073387.1-201ENST00000453261 709 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 NECAP1P2-201ENST00000455668 727 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 snoU13.4-201ENST00000458916 104 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 HSPD1P15-201ENST00000505573 1122 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AC109458.1-201ENST00000508858 316 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 MTCYBP37-201ENST00000510642 1133 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 MIR2114-201ENST00000516645 80 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AC106782.4-201ENST00000568264 210 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 XIAPP1-201ENST00000603162 600 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 AC092650.2-201ENST00000619984 902 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 FAM35DP-201ENST00000323387 2712 ntBASIC3.72□□□□□ -1.81
HDDC3Q8N4P3 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.71□□□□□ -1.81
HDDC3Q8N4P3 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.71□□□□□ -1.81
HDDC3Q8N4P3 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.81
HDDC3Q8N4P3 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC093010.3-201ENST00000570269 15214 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 SLC9B1P2-201ENST00000398120 1184 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 RNU6-575P-201ENST00000411326 105 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC019070.1-201ENST00000415008 1024 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AL159169.1-201ENST00000421119 127 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AC097713.2-201ENST00000430199 356 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 RPL21P10-201ENST00000463521 490 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 GAPDHP39-201ENST00000481866 979 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 VPS26AP1-201ENST00000483197 979 ntBASIC3.71□□□□□ -1.82
HDDC3Q8N4P3 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms