Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC88BA6NC98 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC88BA6NC98 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
CCDC88BA6NC98 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC88BA6NC98 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC88BA6NC98 AC099063.2-201ENST00000446360 662 ntBASIC4.24□□□□□ -1.73
CCDC88BA6NC98 AC133134.1-201ENST00000466800 359 ntBASIC4.24□□□□□ -1.73
CCDC88BA6NC98 AC011037.1-201ENST00000483964 558 ntBASIC4.24□□□□□ -1.73
CCDC88BA6NC98 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC88BA6NC98 RNU6-991P-201ENST00000516168 107 ntBASIC4.24□□□□□ -1.73
CCDC88BA6NC98 RNA5SP281-201ENST00000516504 135 ntBASIC4.24□□□□□ -1.73
CCDC88BA6NC98 AF186190.1-201ENST00000517470 480 ntBASIC4.24□□□□□ -1.73
CCDC88BA6NC98 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.24□□□□□ -1.73
CCDC88BA6NC98 AL109741.3-201ENST00000561748 592 ntBASIC4.24□□□□□ -1.73
CCDC88BA6NC98 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC88BA6NC98 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC88BA6NC98 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC88BA6NC98 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC88BA6NC98 RPL23AP74-201ENST00000437246 471 ntBASIC4.23□□□□□ -1.73
CCDC88BA6NC98 AC096638.1-201ENST00000444678 216 ntBASIC4.23□□□□□ -1.73
CCDC88BA6NC98 RPL9P32-201ENST00000464118 620 ntBASIC4.23□□□□□ -1.73
CCDC88BA6NC98 AC126182.1-201ENST00000478134 357 ntBASIC4.23□□□□□ -1.73
CCDC88BA6NC98 GAPDHP39-201ENST00000481866 979 ntBASIC4.23□□□□□ -1.73
CCDC88BA6NC98 RN7SL297P-201ENST00000483161 293 ntBASIC4.23□□□□□ -1.73
CCDC88BA6NC98 OR4G11P-201ENST00000492842 939 ntBASIC4.23□□□□□ -1.73
CCDC88BA6NC98 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC88BA6NC98 YWHAZP1-201ENST00000556286 722 ntBASIC4.23□□□□□ -1.73
CCDC88BA6NC98 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC88BA6NC98 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC88BA6NC98 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC88BA6NC98 AC007064.1-201ENST00000412238 351 ntBASIC4.22□□□□□ -1.73
CCDC88BA6NC98 RPS20P25-201ENST00000412447 352 ntBASIC4.22□□□□□ -1.73
CCDC88BA6NC98 IFNA11P-201ENST00000446352 526 ntBASIC4.22□□□□□ -1.73
CCDC88BA6NC98 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC88BA6NC98 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC88BA6NC98 AP001086.1-201ENST00000494882 321 ntBASIC4.22□□□□□ -1.73
CCDC88BA6NC98 AC092436.1-201ENST00000506450 503 ntBASIC4.22□□□□□ -1.73
CCDC88BA6NC98 AC008716.1-201ENST00000511084 513 ntBASIC4.22□□□□□ -1.73
CCDC88BA6NC98 NTAN1P1-201ENST00000603150 646 ntBASIC4.22□□□□□ -1.73
CCDC88BA6NC98 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC88BA6NC98 AL354950.1-201ENST00000614150 568 ntBASIC4.22□□□□□ -1.73
CCDC88BA6NC98 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC88BA6NC98 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC88BA6NC98 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC88BA6NC98 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC4.21□□□□□ -1.73
CCDC88BA6NC98 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.21□□□□□ -1.73
CCDC88BA6NC98 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.21□□□□□ -1.73
CCDC88BA6NC98 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC88BA6NC98 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC88BA6NC98 SNORD114-1-201ENST00000362705 72 ntBASIC4.21□□□□□ -1.74
CCDC88BA6NC98 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC88BA6NC98 PTP4A1P5-201ENST00000420305 455 ntBASIC4.21□□□□□ -1.74
CCDC88BA6NC98 AL159169.1-201ENST00000421119 127 ntBASIC4.21□□□□□ -1.74
CCDC88BA6NC98 AL353705.4-201ENST00000449661 238 ntBASIC4.21□□□□□ -1.74
CCDC88BA6NC98 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC88BA6NC98 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC88BA6NC98 AC012119.1-201ENST00000603184 222 ntBASIC4.21□□□□□ -1.74
CCDC88BA6NC98 AC107871.2-201ENST00000612894 502 ntBASIC4.21□□□□□ -1.74
CCDC88BA6NC98 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
CCDC88BA6NC98 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
CCDC88BA6NC98 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CCDC88BA6NC98 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC88BA6NC98 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC4.21□□□□□ -1.74
CCDC88BA6NC98 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC88BA6NC98 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC88BA6NC98 RNU1-73P-201ENST00000383971 164 ntBASIC4.2□□□□□ -1.74
CCDC88BA6NC98 DPH3P2-201ENST00000422618 250 ntBASIC4.2□□□□□ -1.74
CCDC88BA6NC98 IPMKP1-201ENST00000425988 855 ntBASIC4.2□□□□□ -1.74
CCDC88BA6NC98 AC091544.1-201ENST00000484702 348 ntBASIC4.2□□□□□ -1.74
CCDC88BA6NC98 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC88BA6NC98 SEC11B-201ENST00000518383 499 ntBASIC4.2□□□□□ -1.74
CCDC88BA6NC98 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC88BA6NC98 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC88BA6NC98 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC88BA6NC98 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
CCDC88BA6NC98 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC88BA6NC98 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
CCDC88BA6NC98 RPL21P132-201ENST00000331267 462 ntBASIC4.19□□□□□ -1.74
CCDC88BA6NC98 MDM4-202ENST00000367180 547 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC88BA6NC98 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC88BA6NC98 EIF5P1-201ENST00000400019 1231 ntBASIC4.19□□□□□ -1.74
CCDC88BA6NC98 AC018634.1-201ENST00000437554 401 ntBASIC4.19□□□□□ -1.74
CCDC88BA6NC98 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.19□□□□□ -1.74
CCDC88BA6NC98 RNU7-170P-201ENST00000459303 61 ntBASIC4.19□□□□□ -1.74
CCDC88BA6NC98 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC88BA6NC98 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC4.19□□□□□ -1.74
CCDC88BA6NC98 AP006248.2-201ENST00000623309 592 ntBASIC4.19□□□□□ -1.74
CCDC88BA6NC98 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
CCDC88BA6NC98 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
CCDC88BA6NC98 AC093010.3-201ENST00000570269 15214 ntBASIC4.19□□□□□ -1.74
CCDC88BA6NC98 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC88BA6NC98 RN7SKP140-201ENST00000411196 284 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 AL137014.1-201ENST00000420490 1226 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 AL591806.2-201ENST00000433122 173 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC88BA6NC98 RPL30P9-201ENST00000465586 330 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 RPL9P6-201ENST00000492764 598 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 MTND4P2-201ENST00000507767 1203 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 AC026436.1-201ENST00000510537 270 ntBASIC4.18□□□□□ -1.74
CCDC88BA6NC98 RNA5SP76-201ENST00000516277 87 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms