Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
MSH3P20585 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSH3P20585 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
MSH3P20585 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.87□□□□□ -1.79
MSH3P20585 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.87□□□□□ -1.79
MSH3P20585 RNU6-115P-201ENST00000364310 107 ntBASIC3.87□□□□□ -1.79
MSH3P20585 Y_RNA.311-201ENST00000365068 96 ntBASIC3.87□□□□□ -1.79
MSH3P20585 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSH3P20585 MIR1193-201ENST00000408109 78 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AL136133.1-201ENST00000413694 376 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.87□□□□□ -1.79
MSH3P20585 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH3P20585 AL365203.2-201ENST00000423444 196 ntBASIC3.87□□□□□ -1.79
MSH3P20585 MTND4P20-201ENST00000424125 869 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AL593851.1-201ENST00000426171 157 ntBASIC3.87□□□□□ -1.79
MSH3P20585 RPL7P2-201ENST00000427639 268 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH3P20585 AL050321.1-201ENST00000432363 400 ntBASIC3.87□□□□□ -1.79
MSH3P20585 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH3P20585 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC3.87□□□□□ -1.79
MSH3P20585 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
MSH3P20585 AL606662.1-201ENST00000445763 553 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.87□□□□□ -1.79
MSH3P20585 AL500522.2-201ENST00000448562 343 ntBASIC3.87□□□□□ -1.79
MSH3P20585 RPL12P26-201ENST00000452430 487 ntBASIC3.87□□□□□ -1.79
MSH3P20585 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH3P20585 SNRPGP5-201ENST00000456003 220 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AC010468.1-201ENST00000461022 817 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC3.87□□□□□ -1.79
MSH3P20585 RN7SL132P-201ENST00000478131 296 ntBASIC3.87□□□□□ -1.79
MSH3P20585 VN1R105P-201ENST00000486595 910 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.87□□□□□ -1.79
MSH3P20585 AC117522.2-201ENST00000510049 657 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AC110792.2-201ENST00000510278 224 ntBASIC3.87□□□□□ -1.79
MSH3P20585 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
MSH3P20585 AC026726.1-201ENST00000512859 601 ntBASIC3.87□□□□□ -1.79
MSH3P20585 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.87□□□□□ -1.79
MSH3P20585 RN7SKP96-201ENST00000516948 297 ntBASIC3.87□□□□□ -1.79
MSH3P20585 NDUFA5P2-201ENST00000519723 344 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH3P20585 MTCO1P47-201ENST00000523889 1271 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AC087373.1-201ENST00000524920 491 ntBASIC3.87□□□□□ -1.79
MSH3P20585 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH3P20585 AP001189.2-201ENST00000527320 189 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH3P20585 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
MSH3P20585 YPEL5P3-201ENST00000547227 352 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.87□□□□□ -1.79
MSH3P20585 TRAV15-201ENST00000556680 249 ntBASIC3.87□□□□□ -1.79
MSH3P20585 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC3.87□□□□□ -1.79
MSH3P20585 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH3P20585 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.87□□□□□ -1.79
MSH3P20585 AC015726.1-201ENST00000602353 681 ntBASIC3.87□□□□□ -1.79
MSH3P20585 Z94722.1-201ENST00000604328 474 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AC106791.2-201ENST00000604680 391 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AL592221.1-201ENST00000605266 382 ntBASIC3.87□□□□□ -1.79
MSH3P20585 VIS1.1-201ENST00000610517 203 ntBASIC3.87□□□□□ -1.79
MSH3P20585 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
MSH3P20585 AC005332.6-201ENST00000613178 446 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AL392048.1-201ENST00000613946 534 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AC069209.1-201ENST00000619282 651 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.87□□□□□ -1.79
MSH3P20585 AC007671.2-201ENST00000637344 619 ntBASIC3.87□□□□□ -1.79
MSH3P20585 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.87□□□□□ -1.79
MSH3P20585 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSH3P20585 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSH3P20585 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
MSH3P20585 AP000526.1-201ENST00000603308 1388 ntBASIC3.87□□□□□ -1.79
MSH3P20585 AC005539.1-201ENST00000443768 1479 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AC106871.1-201ENST00000568324 3102 ntBASIC3.86□□□□□ -1.79
MSH3P20585 FAM91A3P-201ENST00000456826 2544 ntBASIC3.86□□□□□ -1.79
MSH3P20585 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
MSH3P20585 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH3P20585 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.86□□□□□ -1.79
MSH3P20585 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSH3P20585 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
MSH3P20585 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
MSH3P20585 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
MSH3P20585 RNA5SP479-201ENST00000364858 117 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.86□□□□□ -1.79
MSH3P20585 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.86□□□□□ -1.79
MSH3P20585 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.86□□□□□ -1.79
MSH3P20585 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
MSH3P20585 MTCO3P31-201ENST00000405526 789 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC3.86□□□□□ -1.79
MSH3P20585 AC092634.6-201ENST00000418558 192 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AC098592.1-201ENST00000419352 333 ntBASIC3.86□□□□□ -1.79
MSH3P20585 USP9YP26-201ENST00000421008 661 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AC090960.1-201ENST00000421072 306 ntBASIC3.86□□□□□ -1.79
MSH3P20585 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.86□□□□□ -1.79
MSH3P20585 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.86□□□□□ -1.79
MSH3P20585 AL365338.1-201ENST00000422282 858 ntBASIC3.86□□□□□ -1.79
MSH3P20585 RPP40P1-201ENST00000426762 456 ntBASIC3.86□□□□□ -1.79
MSH3P20585 IFNNP1-201ENST00000429219 553 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AL513175.1-201ENST00000431492 780 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AC010881.1-201ENST00000433830 235 ntBASIC3.86□□□□□ -1.79
MSH3P20585 AC241584.1-201ENST00000438469 1241 ntBASIC3.86□□□□□ -1.79
MSH3P20585 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC3.86□□□□□ -1.79
MSH3P20585 AL445567.1-201ENST00000439121 144 ntBASIC3.86□□□□□ -1.79
MSH3P20585 MTCYBP34-201ENST00000439552 670 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms