Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Zkscan3-208ENSMUST00000224820 5398 ntBASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC18.06■□□□□ 0.48
Prpf40aQ9R1C7 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Gm26039-201ENSMUST00000158152 144 ntBASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Prpf40aQ9R1C7 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Gm21559-201ENSMUST00000220638 855 ntBASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Gm8587-201ENSMUST00000076538 843 ntBASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.04■□□□□ 0.48
Prpf40aQ9R1C7 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Mapk8ip3-208ENSMUST00000121787 5431 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Gm18115-201ENSMUST00000221209 621 ntBASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 AC158538.1-201ENSMUST00000225870 294 ntBASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Prpf40aQ9R1C7 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 Wnt10b-204ENSMUST00000226655 1807 ntBASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Prpf40aQ9R1C7 Gm3272-201ENSMUST00000181181 1229 ntBASIC18.02■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms