Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim54Q9ERP3 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim54Q9ERP3 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim54Q9ERP3 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim54Q9ERP3 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim54Q9ERP3 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC17.73■□□□□ 0.43
Trim54Q9ERP3 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim54Q9ERP3 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim54Q9ERP3 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim54Q9ERP3 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim54Q9ERP3 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim54Q9ERP3 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim54Q9ERP3 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Trim54Q9ERP3 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim54Q9ERP3 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim54Q9ERP3 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim54Q9ERP3 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim54Q9ERP3 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Trim54Q9ERP3 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC17.72■□□□□ 0.43
Trim54Q9ERP3 Gm43514-201ENSMUST00000198852 424 ntBASIC17.72■□□□□ 0.43
Trim54Q9ERP3 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim54Q9ERP3 AC107711.5-202ENSMUST00000226429 702 ntBASIC17.72■□□□□ 0.43
Trim54Q9ERP3 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim54Q9ERP3 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim54Q9ERP3 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim54Q9ERP3 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim54Q9ERP3 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Trim54Q9ERP3 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim54Q9ERP3 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim54Q9ERP3 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim54Q9ERP3 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim54Q9ERP3 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Trim54Q9ERP3 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC17.71■□□□□ 0.43
Trim54Q9ERP3 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trim54Q9ERP3 AW822252-206ENSMUST00000208904 237 ntBASIC17.71■□□□□ 0.43
Trim54Q9ERP3 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC17.71■□□□□ 0.43
Trim54Q9ERP3 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
Trim54Q9ERP3 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Trim54Q9ERP3 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Gm18733-201ENSMUST00000173950 856 ntBASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Gm18195-201ENSMUST00000207604 706 ntBASIC17.7■□□□□ 0.42
Trim54Q9ERP3 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Gm6296-201ENSMUST00000222599 943 ntBASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trim54Q9ERP3 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Gm6376-201ENSMUST00000209407 580 ntBASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Rps4l-201ENSMUST00000071745 943 ntBASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trim54Q9ERP3 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms