Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Syne4Q8CII8 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Syne4Q8CII8 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC18.55■□□□□ 0.56
Syne4Q8CII8 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
Syne4Q8CII8 Gm43808-201ENSMUST00000202534 2065 ntBASIC18.54■□□□□ 0.56
Syne4Q8CII8 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Gm25406-201ENSMUST00000157599 105 ntBASIC18.54■□□□□ 0.56
Syne4Q8CII8 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Gm7063-201ENSMUST00000186840 981 ntBASIC18.54■□□□□ 0.56
Syne4Q8CII8 Gm10576-201ENSMUST00000191927 825 ntBASIC18.54■□□□□ 0.56
Syne4Q8CII8 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC18.54■□□□□ 0.56
Syne4Q8CII8 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Syne4Q8CII8 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Syne4Q8CII8 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Gm10175-201ENSMUST00000086013 645 ntBASIC18.53■□□□□ 0.56
Syne4Q8CII8 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Syne4Q8CII8 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.53■□□□□ 0.56
Syne4Q8CII8 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Syne4Q8CII8 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Syne4Q8CII8 Gm5648-201ENSMUST00000122244 1587 ntBASIC18.52■□□□□ 0.56
Syne4Q8CII8 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Syne4Q8CII8 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Syne4Q8CII8 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Syne4Q8CII8 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC18.52■□□□□ 0.56
Syne4Q8CII8 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Syne4Q8CII8 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC18.52■□□□□ 0.56
Syne4Q8CII8 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Syne4Q8CII8 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC18.52■□□□□ 0.56
Syne4Q8CII8 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Syne4Q8CII8 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC18.52■□□□□ 0.55
Syne4Q8CII8 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Syne4Q8CII8 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Syne4Q8CII8 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Mir3113-201ENSMUST00000175478 76 ntBASIC18.51■□□□□ 0.55
Syne4Q8CII8 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Syne4Q8CII8 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Syne4Q8CII8 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Syne4Q8CII8 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Syne4Q8CII8 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Syne4Q8CII8 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Syne4Q8CII8 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
Syne4Q8CII8 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC18.5■□□□□ 0.55
Syne4Q8CII8 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC18.5■□□□□ 0.55
Syne4Q8CII8 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Syne4Q8CII8 AC159106.1-201ENSMUST00000224421 690 ntBASIC18.5■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms