Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Vps53Q8CCB4 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Vps53Q8CCB4 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps53Q8CCB4 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps53Q8CCB4 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Vps53Q8CCB4 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps53Q8CCB4 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps53Q8CCB4 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Vps53Q8CCB4 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps53Q8CCB4 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps53Q8CCB4 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps53Q8CCB4 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Vps53Q8CCB4 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps53Q8CCB4 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps53Q8CCB4 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Vps53Q8CCB4 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Gm11950-201ENSMUST00000121615 838 ntBASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Umpk-ps-201ENSMUST00000211897 827 ntBASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Zkscan3-208ENSMUST00000224820 5398 ntBASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Vps53Q8CCB4 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Vps53Q8CCB4 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps53Q8CCB4 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps53Q8CCB4 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps53Q8CCB4 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps53Q8CCB4 Gm26039-201ENSMUST00000158152 144 ntBASIC19.06■□□□□ 0.64
Vps53Q8CCB4 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC19.06■□□□□ 0.64
Vps53Q8CCB4 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC19.06■□□□□ 0.64
Vps53Q8CCB4 Gm18958-201ENSMUST00000174258 762 ntBASIC19.06■□□□□ 0.64
Vps53Q8CCB4 Gm27000-201ENSMUST00000182943 842 ntBASIC19.06■□□□□ 0.64
Vps53Q8CCB4 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Vps53Q8CCB4 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps53Q8CCB4 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps53Q8CCB4 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps53Q8CCB4 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Vps53Q8CCB4 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC19.05■□□□□ 0.64
Vps53Q8CCB4 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps53Q8CCB4 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps53Q8CCB4 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps53Q8CCB4 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps53Q8CCB4 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC19.04■□□□□ 0.64
Vps53Q8CCB4 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC19.04■□□□□ 0.64
Vps53Q8CCB4 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps53Q8CCB4 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Vps53Q8CCB4 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms