Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 AL160286.2-201ENST00000567150 934 ntBASIC13.39□□□□□ -0.27
CSMD3Q7Z407 CALM3-211ENST00000598871 561 ntTSL 4 BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 AL137060.1-201ENST00000618151 2648 ntBASIC13.39□□□□□ -0.27
CSMD3Q7Z407 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 KRT8P8-201ENST00000434750 1448 ntBASIC13.39□□□□□ -0.27
CSMD3Q7Z407 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 PCDHAC2-203ENST00000615316 3011 ntBASIC13.39□□□□□ -0.27
CSMD3Q7Z407 KRT8P11-201ENST00000409686 1436 ntBASIC13.39□□□□□ -0.27
CSMD3Q7Z407 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
CSMD3Q7Z407 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 FAAHP1-202ENST00000446499 1238 ntBASIC13.38□□□□□ -0.27
CSMD3Q7Z407 AC092183.1-201ENST00000469884 875 ntBASIC13.38□□□□□ -0.27
CSMD3Q7Z407 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 AC007375.3-201ENST00000600936 2314 ntBASIC13.38□□□□□ -0.27
CSMD3Q7Z407 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 BX276092.5-203ENST00000456199 560 ntBASIC13.38□□□□□ -0.27
CSMD3Q7Z407 RASA4DP-201ENST00000460726 1199 ntBASIC13.38□□□□□ -0.27
CSMD3Q7Z407 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 AC012615.1-201ENST00000565797 1299 ntBASIC13.38□□□□□ -0.27
CSMD3Q7Z407 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CSMD3Q7Z407 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 IL11-204ENST00000590625 1028 ntTSL 2 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CSMD3Q7Z407 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms