Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col1a1P11087 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col1a1P11087 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Col1a1P11087 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col1a1P11087 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col1a1P11087 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col1a1P11087 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col1a1P11087 Gm11620-201ENSMUST00000118770 1845 ntBASIC19.13■□□□□ 0.65
Col1a1P11087 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col1a1P11087 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col1a1P11087 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col1a1P11087 Gm18622-201ENSMUST00000219361 595 ntBASIC19.13■□□□□ 0.65
Col1a1P11087 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col1a1P11087 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
Col1a1P11087 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Col1a1P11087 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col1a1P11087 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col1a1P11087 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Col1a1P11087 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.12■□□□□ 0.65
Col1a1P11087 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col1a1P11087 Gm2308-201ENSMUST00000166539 1004 ntBASIC19.12■□□□□ 0.65
Col1a1P11087 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Col1a1P11087 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC19.12■□□□□ 0.65
Col1a1P11087 AC131709.1-201ENSMUST00000224731 1180 ntBASIC19.12■□□□□ 0.65
Col1a1P11087 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC19.12■□□□□ 0.65
Col1a1P11087 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col1a1P11087 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col1a1P11087 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col1a1P11087 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Col1a1P11087 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col1a1P11087 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col1a1P11087 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col1a1P11087 Gm11025-201ENSMUST00000140773 466 ntBASIC19.11■□□□□ 0.65
Col1a1P11087 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col1a1P11087 Gm37153-201ENSMUST00000193637 231 ntBASIC19.11■□□□□ 0.65
Col1a1P11087 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC19.11■□□□□ 0.65
Col1a1P11087 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col1a1P11087 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col1a1P11087 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC19.11■□□□□ 0.65
Col1a1P11087 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Col1a1P11087 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col1a1P11087 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Col1a1P11087 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Col1a1P11087 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col1a1P11087 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col1a1P11087 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col1a1P11087 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
Col1a1P11087 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
Col1a1P11087 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col1a1P11087 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Col1a1P11087 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col1a1P11087 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col1a1P11087 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
Col1a1P11087 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Col1a1P11087 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col1a1P11087 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col1a1P11087 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col1a1P11087 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col1a1P11087 Rarb-207ENSMUST00000225921 2756 ntBASIC19.1■□□□□ 0.65
Col1a1P11087 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Col1a1P11087 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC19.09■□□□□ 0.65
Col1a1P11087 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC19.09■□□□□ 0.65
Col1a1P11087 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC19.09■□□□□ 0.65
Col1a1P11087 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC19.09■□□□□ 0.65
Col1a1P11087 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC19.09■□□□□ 0.65
Col1a1P11087 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Col1a1P11087 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC19.09■□□□□ 0.65
Col1a1P11087 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Gm15743-202ENSMUST00000182690 1901 ntBASIC19.09■□□□□ 0.65
Col1a1P11087 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC19.09■□□□□ 0.65
Col1a1P11087 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
Col1a1P11087 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC19.09■□□□□ 0.65
Col1a1P11087 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Col1a1P11087 AC124549.3-201ENSMUST00000225541 367 ntBASIC19.09■□□□□ 0.65
Col1a1P11087 AC117588.1-201ENSMUST00000228510 999 ntBASIC19.09■□□□□ 0.65
Col1a1P11087 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC19.09■□□□□ 0.65
Col1a1P11087 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Col1a1P11087 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Col1a1P11087 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Col1a1P11087 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Col1a1P11087 AC132265.1-201ENSMUST00000219233 1665 ntBASIC19.08■□□□□ 0.65
Col1a1P11087 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Col1a1P11087 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Col1a1P11087 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Col1a1P11087 Gm14057-201ENSMUST00000120631 482 ntBASIC19.08■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 41.9 ms