Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 AC099934.2-201ENSMUST00000196389 70 ntBASIC13.67□□□□□ -0.22
Hmgb3O54879 AC156953.1-201ENSMUST00000196953 70 ntBASIC13.67□□□□□ -0.22
Hmgb3O54879 Gm7291-201ENSMUST00000199147 382 ntBASIC13.67□□□□□ -0.22
Hmgb3O54879 AC157822.2-201ENSMUST00000200291 70 ntBASIC13.67□□□□□ -0.22
Hmgb3O54879 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Gm45212-201ENSMUST00000205831 3403 ntBASIC13.67□□□□□ -0.22
Hmgb3O54879 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC13.67□□□□□ -0.22
Hmgb3O54879 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Hmgb3O54879 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Hmgb3O54879 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
Hmgb3O54879 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC13.66□□□□□ -0.22
Hmgb3O54879 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hmgb3O54879 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC13.65□□□□□ -0.22
Hmgb3O54879 Atp8a1-201ENSMUST00000037380 8178 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC13.65□□□□□ -0.22
Hmgb3O54879 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC13.65□□□□□ -0.22
Hmgb3O54879 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC13.65□□□□□ -0.22
Hmgb3O54879 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
Hmgb3O54879 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC13.65□□□□□ -0.22
Hmgb3O54879 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hmgb3O54879 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC13.65□□□□□ -0.22
Hmgb3O54879 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Hmgb3O54879 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC13.65□□□□□ -0.22
Hmgb3O54879 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC13.64□□□□□ -0.23
Hmgb3O54879 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
Hmgb3O54879 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Hmgb3O54879 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Hmgb3O54879 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Hmgb3O54879 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC13.64□□□□□ -0.23
Hmgb3O54879 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 Gm6365-201ENSMUST00000054711 744 ntBASIC13.64□□□□□ -0.23
Hmgb3O54879 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC13.64□□□□□ -0.23
Hmgb3O54879 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC13.64□□□□□ -0.23
Hmgb3O54879 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Hmgb3O54879 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Hmgb3O54879 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
Hmgb3O54879 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Hmgb3O54879 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Hmgb3O54879 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Hmgb3O54879 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
Hmgb3O54879 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC13.63□□□□□ -0.23
Hmgb3O54879 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC13.63□□□□□ -0.23
Hmgb3O54879 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Hmgb3O54879 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms