Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CHMP4AQ9BY43 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC5.15□□□□□ -1.58
CHMP4AQ9BY43 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
CHMP4AQ9BY43 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
CHMP4AQ9BY43 RNU1-64P-201ENST00000365443 163 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 RNA5SP283-201ENST00000365604 119 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 ZNF602P-201ENST00000405929 924 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 RPL7AP73-201ENST00000413490 353 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 LUZP4P1-201ENST00000415420 344 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 RPL7L1P8-201ENST00000469911 741 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AC017015.1-201ENST00000477387 286 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 MTCYBP16-201ENST00000509187 1129 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 IGKV2-38-201ENST00000517443 247 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 RPL12P22-201ENST00000519073 490 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AP001804.3-201ENST00000525146 880 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 GTF2IP8-201ENST00000560687 584 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AC079171.1-201ENST00000568788 914 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AC006254.3-201ENST00000603353 884 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AL139395.1-201ENST00000603662 160 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AC010733.2-201ENST00000589496 5702 ntBASIC5.15□□□□□ -1.59
CHMP4AQ9BY43 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 AC110774.1-201ENST00000623567 2018 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 RNU6-216P-201ENST00000363282 104 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 Z75741.2-201ENST00000417272 1167 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 GLRXP1-201ENST00000423261 334 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 EZH2P1-201ENST00000431167 291 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 HMGN1P5-201ENST00000448591 263 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 COX6CP18-201ENST00000448769 222 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 AC092754.2-201ENST00000463506 460 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 HSPA8P13-201ENST00000523715 472 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 AL139174.1-201ENST00000531489 886 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 SETP7-201ENST00000552169 453 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 AL445435.1-201ENST00000604232 665 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 AL592436.1-201ENST00000605135 558 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 AC107982.1-201ENST00000507171 1300 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 ZNF807-201ENST00000328088 1707 ntBASIC5.14□□□□□ -1.59
CHMP4AQ9BY43 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 CDR1-202ENST00000625883 1485 ntBASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 MAPK10-362ENST00000641864 4484 ntBASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 MIR372-201ENST00000362225 67 ntBASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 RNA5SP97-201ENST00000365006 84 ntBASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 SNORA37-201ENST00000384504 129 ntBASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 ARF4P3-201ENST00000397387 509 ntBASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 AC007435.1-201ENST00000421086 415 ntBASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 AL049610.1-201ENST00000423374 372 ntBASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 AC233728.2-201ENST00000425348 757 ntBASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 AC079776.3-201ENST00000450665 370 ntBASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 RNA5SP164-201ENST00000516533 110 ntBASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 AC087808.1-201ENST00000520501 361 ntBASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 PTS-202ENST00000524931 696 ntTSL 3 BASIC5.13□□□□□ -1.59
CHMP4AQ9BY43 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms